Hb_000117_090

Information

Type -
Description -
Location Contig117: 129769-141938
Sequence    

Annotation

kegg
ID rcu:RCOM_0701710
description zinc finger protein, putative
nr
ID XP_012071430.1
description PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
swissprot
ID A4UMC6
description Tuftelin-interacting protein 11 OS=Monodelphis domestica GN=TFIP11 PE=2 SV=1
trembl
ID A0A067KR52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03975 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05274: 130504-139762 , PASA_asmbl_05275: 140028-141568
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000117_090 0.0 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
2 Hb_000039_160 0.0747640546 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
3 Hb_008566_050 0.0752343203 - - phosphoglycerate mutase, putative [Ricinus communis]
4 Hb_000366_090 0.084654214 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
5 Hb_168319_030 0.0854957066 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
6 Hb_021409_030 0.0959389638 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
7 Hb_000563_250 0.0984250598 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
8 Hb_000679_090 0.0995788812 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
9 Hb_000009_450 0.1009389241 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
10 Hb_000110_320 0.1013116662 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
11 Hb_000033_020 0.1026793946 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002284_200 0.1033178214 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
13 Hb_000175_060 0.105759714 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
14 Hb_000120_960 0.1057885453 - - isocitrate dehydrogenase, putative [Ricinus communis]
15 Hb_005228_070 0.1065267765 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
16 Hb_000086_280 0.1072615512 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
17 Hb_002878_020 0.1108412142 - - mitochondrial carrier protein, putative [Ricinus communis]
18 Hb_000696_040 0.1110960691 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_010407_180 0.1117547313 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
20 Hb_011173_050 0.1119944314 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]

Gene co-expression network

sample Hb_000117_090 Hb_000117_090 Hb_000039_160 Hb_000039_160 Hb_000117_090--Hb_000039_160 Hb_008566_050 Hb_008566_050 Hb_000117_090--Hb_008566_050 Hb_000366_090 Hb_000366_090 Hb_000117_090--Hb_000366_090 Hb_168319_030 Hb_168319_030 Hb_000117_090--Hb_168319_030 Hb_021409_030 Hb_021409_030 Hb_000117_090--Hb_021409_030 Hb_000563_250 Hb_000563_250 Hb_000117_090--Hb_000563_250 Hb_000039_160--Hb_008566_050 Hb_000529_170 Hb_000529_170 Hb_000039_160--Hb_000529_170 Hb_008725_260 Hb_008725_260 Hb_000039_160--Hb_008725_260 Hb_001245_100 Hb_001245_100 Hb_000039_160--Hb_001245_100 Hb_000155_200 Hb_000155_200 Hb_000039_160--Hb_000155_200 Hb_001437_150 Hb_001437_150 Hb_008566_050--Hb_001437_150 Hb_008566_050--Hb_000155_200 Hb_004705_080 Hb_004705_080 Hb_008566_050--Hb_004705_080 Hb_001123_130 Hb_001123_130 Hb_008566_050--Hb_001123_130 Hb_000366_090--Hb_168319_030 Hb_000033_020 Hb_000033_020 Hb_000366_090--Hb_000033_020 Hb_000019_060 Hb_000019_060 Hb_000366_090--Hb_000019_060 Hb_000110_320 Hb_000110_320 Hb_000366_090--Hb_000110_320 Hb_004375_150 Hb_004375_150 Hb_000366_090--Hb_004375_150 Hb_168319_030--Hb_004375_150 Hb_168319_030--Hb_000019_060 Hb_027472_170 Hb_027472_170 Hb_168319_030--Hb_027472_170 Hb_168319_030--Hb_021409_030 Hb_129204_030 Hb_129204_030 Hb_021409_030--Hb_129204_030 Hb_004375_140 Hb_004375_140 Hb_021409_030--Hb_004375_140 Hb_138585_060 Hb_138585_060 Hb_021409_030--Hb_138585_060 Hb_000608_370 Hb_000608_370 Hb_021409_030--Hb_000608_370 Hb_000240_090 Hb_000240_090 Hb_021409_030--Hb_000240_090 Hb_012753_160 Hb_012753_160 Hb_021409_030--Hb_012753_160 Hb_001616_030 Hb_001616_030 Hb_000563_250--Hb_001616_030 Hb_000120_680 Hb_000120_680 Hb_000563_250--Hb_000120_680 Hb_000563_250--Hb_000240_090 Hb_000563_250--Hb_021409_030 Hb_000086_280 Hb_000086_280 Hb_000563_250--Hb_000086_280 Hb_021409_160 Hb_021409_160 Hb_000563_250--Hb_021409_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1918 16.2507 13.2146 8.36055 12.0667 10.2821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6011 35.7181 38.5853 10.1303 7.43495

CAGE analysis