Hb_000117_110

Information

Type -
Description -
Location Contig117: 175193-177562
Sequence    

Annotation

kegg
ID rcu:RCOM_1312160
description transferase, putative (EC:2.4.1.12)
nr
ID XP_002518853.1
description transferase, putative [Ricinus communis]
swissprot
ID Q0WVN5
description Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2
trembl
ID B9RYN4
description Transferase, putative OS=Ricinus communis GN=RCOM_1312160 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cellulose synthase-like protein g3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000117_110 0.0 - - transferase, putative [Ricinus communis]
2 Hb_000398_200 0.0683113195 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
3 Hb_001677_130 0.0752129866 - - hypothetical protein POPTR_0081s002101g, partial [Populus trichocarpa]
4 Hb_004712_140 0.1126829735 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
5 Hb_010327_010 0.1192800688 - - calcium ion binding protein, putative [Ricinus communis]
6 Hb_002218_060 0.1232757634 - - conserved hypothetical protein [Ricinus communis]
7 Hb_091913_010 0.1337534354 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
8 Hb_007328_010 0.1343942 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
9 Hb_000119_050 0.1347875385 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
10 Hb_005545_080 0.1399760617 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
11 Hb_000039_100 0.1413769705 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
12 Hb_011925_010 0.1413813372 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
13 Hb_001274_040 0.1436782411 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
14 Hb_001031_020 0.1437086175 - - hypothetical protein VITISV_000631 [Vitis vinifera]
15 Hb_141990_050 0.1456407667 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
16 Hb_003376_150 0.1460985637 - - PREDICTED: peroxidase 21 [Jatropha curcas]
17 Hb_041290_030 0.1494615294 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
18 Hb_000029_180 0.1521912412 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
19 Hb_005588_010 0.1601620919 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
20 Hb_007371_020 0.1612195072 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000117_110 Hb_000117_110 Hb_000398_200 Hb_000398_200 Hb_000117_110--Hb_000398_200 Hb_001677_130 Hb_001677_130 Hb_000117_110--Hb_001677_130 Hb_004712_140 Hb_004712_140 Hb_000117_110--Hb_004712_140 Hb_010327_010 Hb_010327_010 Hb_000117_110--Hb_010327_010 Hb_002218_060 Hb_002218_060 Hb_000117_110--Hb_002218_060 Hb_091913_010 Hb_091913_010 Hb_000117_110--Hb_091913_010 Hb_000398_200--Hb_001677_130 Hb_000398_200--Hb_004712_140 Hb_003376_150 Hb_003376_150 Hb_000398_200--Hb_003376_150 Hb_007328_010 Hb_007328_010 Hb_000398_200--Hb_007328_010 Hb_011925_010 Hb_011925_010 Hb_000398_200--Hb_011925_010 Hb_001677_130--Hb_007328_010 Hb_001677_130--Hb_004712_140 Hb_001677_130--Hb_091913_010 Hb_001677_130--Hb_010327_010 Hb_041290_030 Hb_041290_030 Hb_004712_140--Hb_041290_030 Hb_004712_140--Hb_010327_010 Hb_000331_710 Hb_000331_710 Hb_004712_140--Hb_000331_710 Hb_021596_070 Hb_021596_070 Hb_004712_140--Hb_021596_070 Hb_007371_020 Hb_007371_020 Hb_010327_010--Hb_007371_020 Hb_108055_010 Hb_108055_010 Hb_010327_010--Hb_108055_010 Hb_000003_620 Hb_000003_620 Hb_010327_010--Hb_000003_620 Hb_000146_110 Hb_000146_110 Hb_010327_010--Hb_000146_110 Hb_000029_180 Hb_000029_180 Hb_002218_060--Hb_000029_180 Hb_002218_060--Hb_001677_130 Hb_003867_030 Hb_003867_030 Hb_002218_060--Hb_003867_030 Hb_002218_060--Hb_000398_200 Hb_030370_070 Hb_030370_070 Hb_002218_060--Hb_030370_070 Hb_008897_020 Hb_008897_020 Hb_091913_010--Hb_008897_020 Hb_091913_010--Hb_007328_010 Hb_045414_010 Hb_045414_010 Hb_091913_010--Hb_045414_010 Hb_039650_030 Hb_039650_030 Hb_091913_010--Hb_039650_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0152198 21.7589 1.15322 1.68925 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.109714 0 1.04095 2.53465

CAGE analysis