Hb_000117_150

Information

Type -
Description -
Location Contig117: 205180-206851
Sequence    

Annotation

kegg
ID rcu:RCOM_0079810
description hypothetical protein
nr
ID XP_002534024.1
description hypothetical protein RCOM_0079810 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T705
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0079810 PE=4 SV=1
Gene Ontology
ID GO:0003824
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000117_150 0.0 - - hypothetical protein RCOM_0079810 [Ricinus communis]
2 Hb_016835_020 0.1725563736 - - unnamed protein product [Coffea canephora]
3 Hb_025668_020 0.1731811305 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000009_430 0.1755094971 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002255_080 0.1886528486 - - -
6 Hb_001597_090 0.189751479 - - -
7 Hb_104835_010 0.1952935519 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
8 Hb_007676_060 0.1988786701 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
9 Hb_000169_100 0.2002086558 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
10 Hb_002542_050 0.2009303939 - - -
11 Hb_003450_010 0.2009308154 - - -
12 Hb_004021_020 0.2025823821 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
13 Hb_165396_010 0.2026955865 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
14 Hb_146930_010 0.205579713 - - -
15 Hb_029727_010 0.2074485072 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_006807_010 0.2082267082 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
17 Hb_001369_270 0.2122214797 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000751_060 0.2144640925 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
19 Hb_002311_270 0.216915488 - - PREDICTED: WD repeat-containing protein 43-like [Malus domestica]
20 Hb_001622_020 0.2192218073 - - -

Gene co-expression network

sample Hb_000117_150 Hb_000117_150 Hb_016835_020 Hb_016835_020 Hb_000117_150--Hb_016835_020 Hb_025668_020 Hb_025668_020 Hb_000117_150--Hb_025668_020 Hb_000009_430 Hb_000009_430 Hb_000117_150--Hb_000009_430 Hb_002255_080 Hb_002255_080 Hb_000117_150--Hb_002255_080 Hb_001597_090 Hb_001597_090 Hb_000117_150--Hb_001597_090 Hb_104835_010 Hb_104835_010 Hb_000117_150--Hb_104835_010 Hb_005843_060 Hb_005843_060 Hb_016835_020--Hb_005843_060 Hb_001369_270 Hb_001369_270 Hb_016835_020--Hb_001369_270 Hb_110737_010 Hb_110737_010 Hb_016835_020--Hb_110737_010 Hb_003030_050 Hb_003030_050 Hb_016835_020--Hb_003030_050 Hb_029727_010 Hb_029727_010 Hb_016835_020--Hb_029727_010 Hb_167457_010 Hb_167457_010 Hb_016835_020--Hb_167457_010 Hb_007676_060 Hb_007676_060 Hb_025668_020--Hb_007676_060 Hb_000751_070 Hb_000751_070 Hb_025668_020--Hb_000751_070 Hb_000567_150 Hb_000567_150 Hb_025668_020--Hb_000567_150 Hb_170878_060 Hb_170878_060 Hb_025668_020--Hb_170878_060 Hb_001519_240 Hb_001519_240 Hb_025668_020--Hb_001519_240 Hb_003992_220 Hb_003992_220 Hb_025668_020--Hb_003992_220 Hb_000751_060 Hb_000751_060 Hb_000009_430--Hb_000751_060 Hb_000009_430--Hb_007676_060 Hb_000120_880 Hb_000120_880 Hb_000009_430--Hb_000120_880 Hb_000254_060 Hb_000254_060 Hb_000009_430--Hb_000254_060 Hb_011849_020 Hb_011849_020 Hb_000009_430--Hb_011849_020 Hb_000982_120 Hb_000982_120 Hb_000009_430--Hb_000982_120 Hb_007975_020 Hb_007975_020 Hb_002255_080--Hb_007975_020 Hb_001652_070 Hb_001652_070 Hb_002255_080--Hb_001652_070 Hb_001341_190 Hb_001341_190 Hb_002255_080--Hb_001341_190 Hb_001737_040 Hb_001737_040 Hb_002255_080--Hb_001737_040 Hb_002311_260 Hb_002311_260 Hb_002255_080--Hb_002311_260 Hb_001597_090--Hb_007676_060 Hb_146930_010 Hb_146930_010 Hb_001597_090--Hb_146930_010 Hb_001288_050 Hb_001288_050 Hb_001597_090--Hb_001288_050 Hb_000751_050 Hb_000751_050 Hb_001597_090--Hb_000751_050 Hb_001597_090--Hb_000751_070 Hb_001571_020 Hb_001571_020 Hb_001597_090--Hb_001571_020 Hb_002542_050 Hb_002542_050 Hb_104835_010--Hb_002542_050 Hb_165396_010 Hb_165396_010 Hb_104835_010--Hb_165396_010 Hb_002042_040 Hb_002042_040 Hb_104835_010--Hb_002042_040 Hb_002157_060 Hb_002157_060 Hb_104835_010--Hb_002157_060 Hb_104835_010--Hb_000009_430 Hb_002965_130 Hb_002965_130 Hb_104835_010--Hb_002965_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0569521 0.129708 1.24445 0 0.246645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.30681 2.66153

CAGE analysis