Hb_000118_050

Information

Type -
Description -
Location Contig118: 162555-167109
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000118_050 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_008269_020 6.74888e-05 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_065059_010 0.0002579971 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
4 Hb_084299_010 0.0006617045 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
5 Hb_002656_040 0.0009046666 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
6 Hb_000001_030 0.0011318254 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_099586_010 0.0036518759 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_009813_040 0.0049191437 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
9 Hb_072825_010 0.007061816 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
10 Hb_000283_160 0.0105256796 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
11 Hb_002982_060 0.0113046236 - - hypothetical protein JCGZ_19604 [Jatropha curcas]
12 Hb_031104_010 0.0137298734 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
13 Hb_068578_010 0.0153533629 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
14 Hb_001629_070 0.0156126064 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
15 Hb_048482_010 0.0162775081 - - -
16 Hb_104984_010 0.0209787463 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
17 Hb_000206_260 0.0218670402 - - cysteine protease, putative [Ricinus communis]
18 Hb_189099_010 0.0245784121 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
19 Hb_041626_010 0.024680734 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
20 Hb_073373_010 0.0252567176 - - hypothetical protein JCGZ_11284 [Jatropha curcas]

Gene co-expression network

sample Hb_000118_050 Hb_000118_050 Hb_008269_020 Hb_008269_020 Hb_000118_050--Hb_008269_020 Hb_065059_010 Hb_065059_010 Hb_000118_050--Hb_065059_010 Hb_084299_010 Hb_084299_010 Hb_000118_050--Hb_084299_010 Hb_002656_040 Hb_002656_040 Hb_000118_050--Hb_002656_040 Hb_000001_030 Hb_000001_030 Hb_000118_050--Hb_000001_030 Hb_099586_010 Hb_099586_010 Hb_000118_050--Hb_099586_010 Hb_008269_020--Hb_065059_010 Hb_008269_020--Hb_084299_010 Hb_008269_020--Hb_002656_040 Hb_008269_020--Hb_000001_030 Hb_008269_020--Hb_099586_010 Hb_065059_010--Hb_084299_010 Hb_065059_010--Hb_002656_040 Hb_065059_010--Hb_000001_030 Hb_065059_010--Hb_099586_010 Hb_084299_010--Hb_002656_040 Hb_084299_010--Hb_000001_030 Hb_084299_010--Hb_099586_010 Hb_002656_040--Hb_000001_030 Hb_002656_040--Hb_099586_010 Hb_000001_030--Hb_099586_010 Hb_009813_040 Hb_009813_040 Hb_099586_010--Hb_009813_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00440993 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0170803

CAGE analysis