Hb_000120_020

Information

Type -
Description -
Location Contig120: 11262-14637
Sequence    

Annotation

kegg
ID rcu:RCOM_0612460
description kinase, putative
nr
ID XP_012067592.1
description PREDICTED: inositol 3-kinase [Jatropha curcas]
swissprot
ID Q93Z01
description Inositol 3-kinase OS=Arabidopsis thaliana GN=At5g58730 PE=2 SV=1
trembl
ID A0A067LDL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08469 PE=4 SV=1
Gene Ontology
ID GO:0016301
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06042: 11360-14503
cDNA
(Sanger)
(ID:Location)		 014_C11.ab1: 11360-11934

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_020 0.0 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
2 Hb_011381_080 0.0582526814 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
3 Hb_002742_090 0.0744348827 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
4 Hb_000016_160 0.0744605783 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
5 Hb_028515_010 0.0766588481 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
6 Hb_000108_190 0.0803575647 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]
7 Hb_000254_050 0.0877475457 - - hypothetical protein VITISV_010510 [Vitis vinifera]
8 Hb_148113_010 0.0883094821 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
9 Hb_000046_350 0.0917721374 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002110_200 0.0945627761 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_005488_200 0.0950926041 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
12 Hb_001222_080 0.0957505605 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
13 Hb_004837_160 0.0969429817 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
14 Hb_000483_390 0.0970262289 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
15 Hb_000436_130 0.0981504409 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
16 Hb_005568_120 0.0995878994 - - Prephenate dehydratase [Hevea brasiliensis]
17 Hb_114310_080 0.1018054573 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000817_030 0.1019610107 - - mak, putative [Ricinus communis]
19 Hb_000373_130 0.1030566307 - - PREDICTED: protein FAM188A [Jatropha curcas]
20 Hb_012423_030 0.1032542918 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_020 Hb_000120_020 Hb_011381_080 Hb_011381_080 Hb_000120_020--Hb_011381_080 Hb_002742_090 Hb_002742_090 Hb_000120_020--Hb_002742_090 Hb_000016_160 Hb_000016_160 Hb_000120_020--Hb_000016_160 Hb_028515_010 Hb_028515_010 Hb_000120_020--Hb_028515_010 Hb_000108_190 Hb_000108_190 Hb_000120_020--Hb_000108_190 Hb_000254_050 Hb_000254_050 Hb_000120_020--Hb_000254_050 Hb_011381_080--Hb_000254_050 Hb_004837_160 Hb_004837_160 Hb_011381_080--Hb_004837_160 Hb_011381_080--Hb_028515_010 Hb_002110_200 Hb_002110_200 Hb_011381_080--Hb_002110_200 Hb_012423_030 Hb_012423_030 Hb_011381_080--Hb_012423_030 Hb_000817_030 Hb_000817_030 Hb_002742_090--Hb_000817_030 Hb_001776_160 Hb_001776_160 Hb_002742_090--Hb_001776_160 Hb_002742_090--Hb_028515_010 Hb_002742_090--Hb_002110_200 Hb_068056_030 Hb_068056_030 Hb_002742_090--Hb_068056_030 Hb_004102_110 Hb_004102_110 Hb_000016_160--Hb_004102_110 Hb_000016_160--Hb_028515_010 Hb_010812_120 Hb_010812_120 Hb_000016_160--Hb_010812_120 Hb_003697_040 Hb_003697_040 Hb_000016_160--Hb_003697_040 Hb_003605_090 Hb_003605_090 Hb_000016_160--Hb_003605_090 Hb_005568_120 Hb_005568_120 Hb_028515_010--Hb_005568_120 Hb_028515_010--Hb_004837_160 Hb_000373_130 Hb_000373_130 Hb_028515_010--Hb_000373_130 Hb_003349_090 Hb_003349_090 Hb_028515_010--Hb_003349_090 Hb_114310_080 Hb_114310_080 Hb_028515_010--Hb_114310_080 Hb_000985_060 Hb_000985_060 Hb_028515_010--Hb_000985_060 Hb_004126_070 Hb_004126_070 Hb_000108_190--Hb_004126_070 Hb_000841_020 Hb_000841_020 Hb_000108_190--Hb_000841_020 Hb_000108_190--Hb_028515_010 Hb_000291_080 Hb_000291_080 Hb_000108_190--Hb_000291_080 Hb_000108_190--Hb_002742_090 Hb_000254_050--Hb_002110_200 Hb_001512_080 Hb_001512_080 Hb_000254_050--Hb_001512_080 Hb_000016_080 Hb_000016_080 Hb_000254_050--Hb_000016_080 Hb_000789_230 Hb_000789_230 Hb_000254_050--Hb_000789_230 Hb_000571_020 Hb_000571_020 Hb_000254_050--Hb_000571_020 Hb_005269_080 Hb_005269_080 Hb_000254_050--Hb_005269_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4587 9.91876 7.10094 23.1797 13.2939 10.5229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.7325 43.0899 35.5691 14.5379 17.4363

CAGE analysis