Hb_000120_040

Information

Type -
Description -
Location Contig120: 27756-32704
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_040 0.0 - - -
2 Hb_006420_050 0.0898361138 - - helicase, putative [Ricinus communis]
3 Hb_001214_180 0.108564693 - - -
4 Hb_000417_200 0.1380468842 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
5 Hb_005237_050 0.1392762027 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]
6 Hb_000122_210 0.1466901904 - - -
7 Hb_009778_060 0.1496726811 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
8 Hb_001405_070 0.1504493286 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
9 Hb_000482_040 0.1550205415 - - Protein YME1, putative [Ricinus communis]
10 Hb_000130_220 0.1594011726 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
11 Hb_000152_110 0.1607305157 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_009150_030 0.161891607 - - hypothetical protein POPTR_0010s14920g [Populus trichocarpa]
13 Hb_003020_220 0.1635106413 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
14 Hb_000140_270 0.1672886934 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
15 Hb_001969_110 0.1689676197 - - PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Jatropha curcas]
16 Hb_002988_040 0.1690357894 - - -
17 Hb_000318_130 0.1690992435 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_005116_050 0.1692287685 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_001511_070 0.1697015949 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
20 Hb_001242_130 0.1699470157 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000120_040 Hb_000120_040 Hb_006420_050 Hb_006420_050 Hb_000120_040--Hb_006420_050 Hb_001214_180 Hb_001214_180 Hb_000120_040--Hb_001214_180 Hb_000417_200 Hb_000417_200 Hb_000120_040--Hb_000417_200 Hb_005237_050 Hb_005237_050 Hb_000120_040--Hb_005237_050 Hb_000122_210 Hb_000122_210 Hb_000120_040--Hb_000122_210 Hb_009778_060 Hb_009778_060 Hb_000120_040--Hb_009778_060 Hb_006420_050--Hb_005237_050 Hb_000130_220 Hb_000130_220 Hb_006420_050--Hb_000130_220 Hb_003020_220 Hb_003020_220 Hb_006420_050--Hb_003020_220 Hb_005116_050 Hb_005116_050 Hb_006420_050--Hb_005116_050 Hb_002988_040 Hb_002988_040 Hb_006420_050--Hb_002988_040 Hb_001214_180--Hb_000417_200 Hb_001214_180--Hb_009778_060 Hb_001405_070 Hb_001405_070 Hb_001214_180--Hb_001405_070 Hb_000482_040 Hb_000482_040 Hb_001214_180--Hb_000482_040 Hb_001138_060 Hb_001138_060 Hb_001214_180--Hb_001138_060 Hb_000417_200--Hb_001405_070 Hb_012725_060 Hb_012725_060 Hb_000417_200--Hb_012725_060 Hb_002235_040 Hb_002235_040 Hb_000417_200--Hb_002235_040 Hb_000170_130 Hb_000170_130 Hb_000417_200--Hb_000170_130 Hb_002686_090 Hb_002686_090 Hb_000417_200--Hb_002686_090 Hb_001242_130 Hb_001242_130 Hb_000417_200--Hb_001242_130 Hb_005237_050--Hb_003020_220 Hb_001049_110 Hb_001049_110 Hb_005237_050--Hb_001049_110 Hb_005237_050--Hb_005116_050 Hb_082609_010 Hb_082609_010 Hb_005237_050--Hb_082609_010 Hb_018133_090 Hb_018133_090 Hb_005237_050--Hb_018133_090 Hb_000283_080 Hb_000283_080 Hb_000122_210--Hb_000283_080 Hb_007747_210 Hb_007747_210 Hb_000122_210--Hb_007747_210 Hb_000122_210--Hb_006420_050 Hb_042202_030 Hb_042202_030 Hb_000122_210--Hb_042202_030 Hb_002338_050 Hb_002338_050 Hb_000122_210--Hb_002338_050 Hb_009778_060--Hb_000482_040 Hb_001214_050 Hb_001214_050 Hb_009778_060--Hb_001214_050 Hb_001195_450 Hb_001195_450 Hb_009778_060--Hb_001195_450 Hb_001723_060 Hb_001723_060 Hb_009778_060--Hb_001723_060 Hb_002374_250 Hb_002374_250 Hb_009778_060--Hb_002374_250 Hb_000635_060 Hb_000635_060 Hb_009778_060--Hb_000635_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.214716 0.380052 0.213778 0.11958 0.158419 0.139324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.159581 0.460185 0.61441 0.286282 1.02408

CAGE analysis