Hb_000120_050

Information

Type -
Description -
Location Contig120: 41335-41778
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05110g
description POPTRDRAFT_878529; hypothetical protein
nr
ID XP_012067567.1
description PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
swissprot
ID O80877
description Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1
trembl
ID A0A067LNP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08467 PE=4 SV=1
Gene Ontology
ID GO:0009416
description protein early flowering 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06046: 41253-42071 , PASA_asmbl_06047: 41253-42626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_050 0.0 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
2 Hb_007943_080 0.0782615574 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
3 Hb_153258_010 0.0788466065 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
4 Hb_007558_140 0.0920926962 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
5 Hb_000358_080 0.0971847114 - - Ribonuclease 3 [Gossypium arboreum]
6 Hb_010863_080 0.0977992578 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
7 Hb_003297_030 0.0992597736 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
8 Hb_019654_100 0.1024545478 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
9 Hb_000619_080 0.1047584515 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
10 Hb_098993_010 0.1049261251 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
11 Hb_000490_030 0.1056236409 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
12 Hb_000056_100 0.1058026933 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
13 Hb_002477_160 0.1063766297 - - hypothetical protein L484_013453 [Morus notabilis]
14 Hb_001635_100 0.1066984548 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
15 Hb_001936_050 0.1093850865 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
16 Hb_006400_040 0.1109572572 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
17 Hb_000364_180 0.1129209525 - - PREDICTED: PI-PLC X domain-containing protein At5g67130 [Jatropha curcas]
18 Hb_000500_040 0.1133652884 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002307_100 0.1139046619 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
20 Hb_000134_350 0.1150893613 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_000120_050 Hb_000120_050 Hb_007943_080 Hb_007943_080 Hb_000120_050--Hb_007943_080 Hb_153258_010 Hb_153258_010 Hb_000120_050--Hb_153258_010 Hb_007558_140 Hb_007558_140 Hb_000120_050--Hb_007558_140 Hb_000358_080 Hb_000358_080 Hb_000120_050--Hb_000358_080 Hb_010863_080 Hb_010863_080 Hb_000120_050--Hb_010863_080 Hb_003297_030 Hb_003297_030 Hb_000120_050--Hb_003297_030 Hb_007943_080--Hb_000358_080 Hb_007943_080--Hb_007558_140 Hb_003861_080 Hb_003861_080 Hb_007943_080--Hb_003861_080 Hb_098993_010 Hb_098993_010 Hb_007943_080--Hb_098993_010 Hb_000134_350 Hb_000134_350 Hb_007943_080--Hb_000134_350 Hb_000041_150 Hb_000041_150 Hb_153258_010--Hb_000041_150 Hb_153258_010--Hb_007558_140 Hb_000997_210 Hb_000997_210 Hb_153258_010--Hb_000997_210 Hb_153258_010--Hb_003297_030 Hb_002027_130 Hb_002027_130 Hb_153258_010--Hb_002027_130 Hb_011918_080 Hb_011918_080 Hb_007558_140--Hb_011918_080 Hb_002477_160 Hb_002477_160 Hb_007558_140--Hb_002477_160 Hb_002307_100 Hb_002307_100 Hb_007558_140--Hb_002307_100 Hb_001085_170 Hb_001085_170 Hb_007558_140--Hb_001085_170 Hb_007558_140--Hb_000997_210 Hb_000490_030 Hb_000490_030 Hb_000358_080--Hb_000490_030 Hb_001936_050 Hb_001936_050 Hb_000358_080--Hb_001936_050 Hb_000138_040 Hb_000138_040 Hb_000358_080--Hb_000138_040 Hb_006091_030 Hb_006091_030 Hb_000358_080--Hb_006091_030 Hb_010710_010 Hb_010710_010 Hb_000358_080--Hb_010710_010 Hb_010863_080--Hb_003297_030 Hb_000417_180 Hb_000417_180 Hb_010863_080--Hb_000417_180 Hb_000155_190 Hb_000155_190 Hb_010863_080--Hb_000155_190 Hb_168707_030 Hb_168707_030 Hb_010863_080--Hb_168707_030 Hb_000179_210 Hb_000179_210 Hb_010863_080--Hb_000179_210 Hb_004195_160 Hb_004195_160 Hb_010863_080--Hb_004195_160 Hb_003609_040 Hb_003609_040 Hb_003297_030--Hb_003609_040 Hb_001635_100 Hb_001635_100 Hb_003297_030--Hb_001635_100 Hb_003297_030--Hb_098993_010 Hb_003297_030--Hb_000179_210 Hb_000030_010 Hb_000030_010 Hb_003297_030--Hb_000030_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.4984 28.776 11.5289 18.2524 68.9141 55.0121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.9692 33.3095 95.1343 22.7901 6.0922

CAGE analysis