Hb_000120_080

Information

Type -
Description -
Location Contig120: 56809-57744
Sequence    

Annotation

kegg
ID cit:102623292
description probable pyridoxal biosynthesis protein PDX1-like
nr
ID XP_012067529.1
description PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]
swissprot
ID Q39963
description Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1
trembl
ID A0A067LDC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08463 PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable pyridoxal biosynthesis protein pdx1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06054: 55450-56089
cDNA
(Sanger)
(ID:Location)		 036_L20.ab1: 56739-57539

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_080 0.0 - - PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]
2 Hb_000580_120 0.0592059997 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
3 Hb_000029_140 0.0725219725 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
4 Hb_000352_310 0.0734894774 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
5 Hb_000189_550 0.0777509867 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
6 Hb_010863_010 0.0779911246 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000011_060 0.0807460218 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
8 Hb_000109_180 0.0811331794 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
9 Hb_005634_010 0.0815934959 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_002908_050 0.0885933627 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
11 Hb_000327_180 0.0903048056 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
12 Hb_001629_030 0.0915859029 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
13 Hb_002471_090 0.0939543261 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
14 Hb_011218_090 0.0947486954 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
15 Hb_000095_080 0.0958833869 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
16 Hb_000984_170 0.0970401865 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
17 Hb_004480_100 0.0971667914 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
18 Hb_001876_010 0.0987860489 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
19 Hb_003531_070 0.0994335311 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
20 Hb_001716_040 0.1012015676 - - ribonuclease p/mrp subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000120_080 Hb_000120_080 Hb_000580_120 Hb_000580_120 Hb_000120_080--Hb_000580_120 Hb_000029_140 Hb_000029_140 Hb_000120_080--Hb_000029_140 Hb_000352_310 Hb_000352_310 Hb_000120_080--Hb_000352_310 Hb_000189_550 Hb_000189_550 Hb_000120_080--Hb_000189_550 Hb_010863_010 Hb_010863_010 Hb_000120_080--Hb_010863_010 Hb_000011_060 Hb_000011_060 Hb_000120_080--Hb_000011_060 Hb_005634_010 Hb_005634_010 Hb_000580_120--Hb_005634_010 Hb_000836_460 Hb_000836_460 Hb_000580_120--Hb_000836_460 Hb_000580_120--Hb_000011_060 Hb_000580_120--Hb_000352_310 Hb_000580_120--Hb_000189_550 Hb_149985_010 Hb_149985_010 Hb_000029_140--Hb_149985_010 Hb_011218_090 Hb_011218_090 Hb_000029_140--Hb_011218_090 Hb_000012_310 Hb_000012_310 Hb_000029_140--Hb_000012_310 Hb_003058_120 Hb_003058_120 Hb_000029_140--Hb_003058_120 Hb_000029_140--Hb_005634_010 Hb_000352_310--Hb_000011_060 Hb_000352_310--Hb_000189_550 Hb_001876_050 Hb_001876_050 Hb_000352_310--Hb_001876_050 Hb_027073_020 Hb_027073_020 Hb_000352_310--Hb_027073_020 Hb_003465_030 Hb_003465_030 Hb_000352_310--Hb_003465_030 Hb_001301_150 Hb_001301_150 Hb_000352_310--Hb_001301_150 Hb_001876_010 Hb_001876_010 Hb_000189_550--Hb_001876_010 Hb_002908_050 Hb_002908_050 Hb_000189_550--Hb_002908_050 Hb_001105_020 Hb_001105_020 Hb_000189_550--Hb_001105_020 Hb_000189_550--Hb_000011_060 Hb_000656_010 Hb_000656_010 Hb_000189_550--Hb_000656_010 Hb_000614_240 Hb_000614_240 Hb_010863_010--Hb_000614_240 Hb_004787_050 Hb_004787_050 Hb_010863_010--Hb_004787_050 Hb_010863_010--Hb_005634_010 Hb_002471_090 Hb_002471_090 Hb_010863_010--Hb_002471_090 Hb_002456_010 Hb_002456_010 Hb_010863_010--Hb_002456_010 Hb_000011_060--Hb_001876_010 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000011_060--Hb_000614_240 Hb_000984_170 Hb_000984_170 Hb_000011_060--Hb_000984_170 Hb_010142_020 Hb_010142_020 Hb_000011_060--Hb_010142_020 Hb_000011_060--Hb_001105_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.942 23.7989 24.1543 31.1834 14.5663 16.7424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.2595 20.8734 38.3245 45.8447 37.5532

CAGE analysis