Hb_000120_100

Information

Type -
Description -
Location Contig120: 68110-69799
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06058: 66990-67534
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_100 0.0 - - -
2 Hb_064773_010 0.0030269503 - - PREDICTED: uncharacterized protein LOC103699620, partial [Phoenix dactylifera]
3 Hb_004668_030 0.0066805234 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
4 Hb_020301_050 0.0072103757 - - conserved hypothetical protein [Ricinus communis]
5 Hb_078439_010 0.0104017928 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
6 Hb_041849_010 0.0153494617 - - beta-glucosidase, putative [Ricinus communis]
7 Hb_169511_020 0.0327893226 - - PREDICTED: uncharacterized protein LOC105037523, partial [Elaeis guineensis]
8 Hb_022264_010 0.0343154271 - - PREDICTED: uncharacterized protein LOC105795741 [Gossypium raimondii]
9 Hb_003910_030 0.0371157335 - - PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]
10 Hb_000953_160 0.0375191759 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
11 Hb_061641_010 0.0390344422 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_004077_010 0.0416875884 - - retinoblastoma-binding protein, putative [Ricinus communis]
13 Hb_103659_010 0.0425526173 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001975_060 0.0499247461 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
15 Hb_003453_070 0.0614079093 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
16 Hb_005839_070 0.0656158431 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
17 Hb_010374_010 0.0661044896 - - TMV resistance protein N, putative [Ricinus communis]
18 Hb_000770_020 0.0735872354 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
19 Hb_011045_020 0.0747080562 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
20 Hb_000302_050 0.0758443466 - - -

Gene co-expression network

sample Hb_000120_100 Hb_000120_100 Hb_064773_010 Hb_064773_010 Hb_000120_100--Hb_064773_010 Hb_004668_030 Hb_004668_030 Hb_000120_100--Hb_004668_030 Hb_020301_050 Hb_020301_050 Hb_000120_100--Hb_020301_050 Hb_078439_010 Hb_078439_010 Hb_000120_100--Hb_078439_010 Hb_041849_010 Hb_041849_010 Hb_000120_100--Hb_041849_010 Hb_169511_020 Hb_169511_020 Hb_000120_100--Hb_169511_020 Hb_064773_010--Hb_004668_030 Hb_064773_010--Hb_020301_050 Hb_064773_010--Hb_041849_010 Hb_064773_010--Hb_078439_010 Hb_022264_010 Hb_022264_010 Hb_064773_010--Hb_022264_010 Hb_004668_030--Hb_020301_050 Hb_004668_030--Hb_078439_010 Hb_004668_030--Hb_041849_010 Hb_004668_030--Hb_169511_020 Hb_020301_050--Hb_078439_010 Hb_020301_050--Hb_041849_010 Hb_020301_050--Hb_169511_020 Hb_078439_010--Hb_169511_020 Hb_078439_010--Hb_041849_010 Hb_041849_010--Hb_022264_010 Hb_003910_030 Hb_003910_030 Hb_169511_020--Hb_003910_030 Hb_000953_160 Hb_000953_160 Hb_169511_020--Hb_000953_160 Hb_061641_010 Hb_061641_010 Hb_169511_020--Hb_061641_010 Hb_004077_010 Hb_004077_010 Hb_169511_020--Hb_004077_010 Hb_103659_010 Hb_103659_010 Hb_169511_020--Hb_103659_010 Hb_001975_060 Hb_001975_060 Hb_169511_020--Hb_001975_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.566546 0 0.679569 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis