Hb_000120_120

Information

Type -
Description -
Location Contig120: 70914-75728
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25930g
description POPTRDRAFT_752026; hypothetical protein
nr
ID XP_012067430.1
description PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
swissprot
ID Q39032
description Phosphoinositide phospholipase C 1 OS=Arabidopsis thaliana GN=PLC1 PE=2 SV=1
trembl
ID A0A067LGL0
description Phosphoinositide phospholipase C OS=Jatropha curcas GN=JCGZ_08460 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphoinositide phospholipase c 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06059: 70653-71072 , PASA_asmbl_06060: 72207-73188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_120 0.0 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
2 Hb_013818_060 0.1132347335 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
3 Hb_027892_010 0.1317478785 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
4 Hb_000249_130 0.142786585 - - hypothetical protein RCOM_0254640 [Ricinus communis]
5 Hb_000120_650 0.1501297789 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
6 Hb_004871_050 0.1516804477 - - hypothetical protein F383_22684 [Gossypium arboreum]
7 Hb_000249_090 0.1570078199 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
8 Hb_000972_010 0.1765225252 - - PREDICTED: kinesin KP1 [Jatropha curcas]
9 Hb_003030_080 0.1804724708 - - multidrug resistance pump, putative [Ricinus communis]
10 Hb_150651_050 0.1806128634 - - phosphoglycerate mutase, putative [Ricinus communis]
11 Hb_011360_080 0.1835021518 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
12 Hb_143629_090 0.1837657584 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
13 Hb_017124_020 0.1892998878 - - hypothetical protein PRUPE_ppa015539mg [Prunus persica]
14 Hb_024952_010 0.1953410805 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
15 Hb_002739_110 0.1972515271 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
16 Hb_001004_040 0.2008452119 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002290_040 0.2010864982 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004800_160 0.2021236403 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
19 Hb_000094_130 0.2033728215 - - PREDICTED: random slug protein 5 [Jatropha curcas]
20 Hb_000567_250 0.2050090377 - - hypothetical protein B456_009G162000 [Gossypium raimondii]

Gene co-expression network

sample Hb_000120_120 Hb_000120_120 Hb_013818_060 Hb_013818_060 Hb_000120_120--Hb_013818_060 Hb_027892_010 Hb_027892_010 Hb_000120_120--Hb_027892_010 Hb_000249_130 Hb_000249_130 Hb_000120_120--Hb_000249_130 Hb_000120_650 Hb_000120_650 Hb_000120_120--Hb_000120_650 Hb_004871_050 Hb_004871_050 Hb_000120_120--Hb_004871_050 Hb_000249_090 Hb_000249_090 Hb_000120_120--Hb_000249_090 Hb_013818_060--Hb_000249_130 Hb_013818_060--Hb_000249_090 Hb_013818_060--Hb_027892_010 Hb_013818_060--Hb_000120_650 Hb_143629_090 Hb_143629_090 Hb_013818_060--Hb_143629_090 Hb_027892_010--Hb_000249_090 Hb_027892_010--Hb_000120_650 Hb_004705_030 Hb_004705_030 Hb_027892_010--Hb_004705_030 Hb_027892_010--Hb_000249_130 Hb_000249_130--Hb_143629_090 Hb_003030_080 Hb_003030_080 Hb_000249_130--Hb_003030_080 Hb_003497_030 Hb_003497_030 Hb_000249_130--Hb_003497_030 Hb_024952_010 Hb_024952_010 Hb_000249_130--Hb_024952_010 Hb_001606_070 Hb_001606_070 Hb_000249_130--Hb_001606_070 Hb_000380_180 Hb_000380_180 Hb_000249_130--Hb_000380_180 Hb_000120_650--Hb_000249_090 Hb_017124_020 Hb_017124_020 Hb_000120_650--Hb_017124_020 Hb_002685_090 Hb_002685_090 Hb_000120_650--Hb_002685_090 Hb_000120_650--Hb_004871_050 Hb_000972_010 Hb_000972_010 Hb_004871_050--Hb_000972_010 Hb_004871_050--Hb_000249_130 Hb_004871_050--Hb_017124_020 Hb_001268_400 Hb_001268_400 Hb_004871_050--Hb_001268_400 Hb_000249_090--Hb_004705_030 Hb_004048_050 Hb_004048_050 Hb_000249_090--Hb_004048_050 Hb_000249_090--Hb_002685_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.6028 0.665742 0.988257 2.82531 27.0002 20.8075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.4796 17.9415 149.935 11.1533 3.66174

CAGE analysis