Hb_000120_170

Information

Type -
Description -
Location Contig120: 111219-113092
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05170g
description POPTRDRAFT_723032; selenoprotein
nr
ID XP_002314095.1
description selenoprotein [Populus trichocarpa]
swissprot
ID Q9STZ2
description SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2
trembl
ID A9P9D4
description Selenoprotein OS=Populus trichocarpa GN=POPTR_0009s05170g PE=2 SV=1
Gene Ontology
ID GO:0005623
description selt-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06071: 111183-113049
cDNA
(Sanger)
(ID:Location)		 016_D13.ab1: 111188-112764 , 026_M18.ab1: 111183-112313 , 037_N07.ab1: 111188-112740

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_170 0.0 - - selenoprotein [Populus trichocarpa]
2 Hb_003549_150 0.073587687 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
3 Hb_013738_020 0.0743747827 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
4 Hb_000076_160 0.0748372645 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
5 Hb_000227_090 0.0773257588 - - PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
6 Hb_000928_220 0.0777477121 - - PREDICTED: protein SCAI [Jatropha curcas]
7 Hb_000009_400 0.079813198 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
8 Hb_000358_230 0.080428184 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
9 Hb_001205_200 0.0805424938 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000087_060 0.0812783351 - - protein transporter, putative [Ricinus communis]
11 Hb_000979_170 0.0843492426 - - clathrin assembly protein, putative [Ricinus communis]
12 Hb_000915_180 0.0844741293 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
13 Hb_002046_110 0.0849540305 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
14 Hb_003120_080 0.0851167831 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
15 Hb_023313_030 0.0851398719 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000886_050 0.0852536341 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
17 Hb_135831_010 0.0854660082 - - hypothetical protein JCGZ_13374 [Jatropha curcas]
18 Hb_028962_020 0.0859213206 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
19 Hb_002028_210 0.0860603805 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
20 Hb_021419_030 0.0860681541 - - hypothetical protein glysoja_023295 [Glycine soja]

Gene co-expression network

sample Hb_000120_170 Hb_000120_170 Hb_003549_150 Hb_003549_150 Hb_000120_170--Hb_003549_150 Hb_013738_020 Hb_013738_020 Hb_000120_170--Hb_013738_020 Hb_000076_160 Hb_000076_160 Hb_000120_170--Hb_000076_160 Hb_000227_090 Hb_000227_090 Hb_000120_170--Hb_000227_090 Hb_000928_220 Hb_000928_220 Hb_000120_170--Hb_000928_220 Hb_000009_400 Hb_000009_400 Hb_000120_170--Hb_000009_400 Hb_007416_300 Hb_007416_300 Hb_003549_150--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_003549_150--Hb_010381_090 Hb_000603_150 Hb_000603_150 Hb_003549_150--Hb_000603_150 Hb_000617_100 Hb_000617_100 Hb_003549_150--Hb_000617_100 Hb_001051_080 Hb_001051_080 Hb_003549_150--Hb_001051_080 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040 Hb_000116_450 Hb_000116_450 Hb_013738_020--Hb_000116_450 Hb_000220_010 Hb_000220_010 Hb_013738_020--Hb_000220_010 Hb_000705_170 Hb_000705_170 Hb_013738_020--Hb_000705_170 Hb_002936_010 Hb_002936_010 Hb_013738_020--Hb_002936_010 Hb_004990_010 Hb_004990_010 Hb_013738_020--Hb_004990_010 Hb_002110_080 Hb_002110_080 Hb_013738_020--Hb_002110_080 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_000130_410 Hb_000130_410 Hb_000227_090--Hb_000130_410 Hb_001541_230 Hb_001541_230 Hb_000227_090--Hb_001541_230 Hb_000000_270 Hb_000000_270 Hb_000227_090--Hb_000000_270 Hb_002217_510 Hb_002217_510 Hb_000227_090--Hb_002217_510 Hb_154114_010 Hb_154114_010 Hb_000227_090--Hb_154114_010 Hb_000402_080 Hb_000402_080 Hb_000928_220--Hb_000402_080 Hb_002876_130 Hb_002876_130 Hb_000928_220--Hb_002876_130 Hb_002078_110 Hb_002078_110 Hb_000928_220--Hb_002078_110 Hb_002835_230 Hb_002835_230 Hb_000928_220--Hb_002835_230 Hb_002046_110 Hb_002046_110 Hb_000928_220--Hb_002046_110 Hb_005276_060 Hb_005276_060 Hb_000009_400--Hb_005276_060 Hb_000046_570 Hb_000046_570 Hb_000009_400--Hb_000046_570 Hb_000322_070 Hb_000322_070 Hb_000009_400--Hb_000322_070 Hb_003929_170 Hb_003929_170 Hb_000009_400--Hb_003929_170 Hb_005797_010 Hb_005797_010 Hb_000009_400--Hb_005797_010 Hb_012322_020 Hb_012322_020 Hb_000009_400--Hb_012322_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.4172 113.919 91.5157 121.02 102.924 77.5746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.2341 74.731 60.9452 77.8665 54.8421

CAGE analysis