Hb_000120_210

Information

Type -
Description -
Location Contig120: 129618-135359
Sequence    

Annotation

kegg
ID tcc:TCM_013436
description Uncharacterized protein isoform 1
nr
ID XP_012067327.1
description PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FWD8
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_013436 PE=4 SV=1
Gene Ontology
ID GO:0016787
description PREDICTED: uncharacterized protein LOC105630189

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06075: 129324-129841 , PASA_asmbl_06076: 129882-134606 , PASA_asmbl_06080: 134948-135095
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_210 0.0 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
2 Hb_004096_240 0.0297800802 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
3 Hb_030414_040 0.0569050529 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
4 Hb_031284_010 0.0634076798 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
5 Hb_001153_210 0.0662518049 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
6 Hb_000111_170 0.068540979 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
7 Hb_021943_080 0.0707165707 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
8 Hb_003186_020 0.0709411096 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
9 Hb_001158_160 0.0719753337 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
10 Hb_138435_010 0.0759403335 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
11 Hb_007283_010 0.0762292306 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
12 Hb_183433_010 0.0766417163 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
13 Hb_004020_040 0.0768810181 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
14 Hb_000847_080 0.0772615504 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
15 Hb_077026_010 0.0779159413 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
16 Hb_032202_080 0.0789732698 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
17 Hb_000175_410 0.0797894038 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
18 Hb_000457_230 0.0800391561 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
19 Hb_000375_390 0.0806874915 - - poly-A binding protein, putative [Ricinus communis]
20 Hb_008059_010 0.0810919446 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000120_210 Hb_000120_210 Hb_004096_240 Hb_004096_240 Hb_000120_210--Hb_004096_240 Hb_030414_040 Hb_030414_040 Hb_000120_210--Hb_030414_040 Hb_031284_010 Hb_031284_010 Hb_000120_210--Hb_031284_010 Hb_001153_210 Hb_001153_210 Hb_000120_210--Hb_001153_210 Hb_000111_170 Hb_000111_170 Hb_000120_210--Hb_000111_170 Hb_021943_080 Hb_021943_080 Hb_000120_210--Hb_021943_080 Hb_004096_240--Hb_030414_040 Hb_004096_240--Hb_031284_010 Hb_000375_390 Hb_000375_390 Hb_004096_240--Hb_000375_390 Hb_004096_240--Hb_021943_080 Hb_003186_020 Hb_003186_020 Hb_004096_240--Hb_003186_020 Hb_001158_160 Hb_001158_160 Hb_030414_040--Hb_001158_160 Hb_005288_070 Hb_005288_070 Hb_030414_040--Hb_005288_070 Hb_000254_100 Hb_000254_100 Hb_030414_040--Hb_000254_100 Hb_030414_040--Hb_000111_170 Hb_008059_010 Hb_008059_010 Hb_031284_010--Hb_008059_010 Hb_000115_280 Hb_000115_280 Hb_031284_010--Hb_000115_280 Hb_031284_010--Hb_003186_020 Hb_138435_010 Hb_138435_010 Hb_031284_010--Hb_138435_010 Hb_000457_230 Hb_000457_230 Hb_031284_010--Hb_000457_230 Hb_001153_210--Hb_138435_010 Hb_002986_100 Hb_002986_100 Hb_001153_210--Hb_002986_100 Hb_005867_070 Hb_005867_070 Hb_001153_210--Hb_005867_070 Hb_003861_050 Hb_003861_050 Hb_001153_210--Hb_003861_050 Hb_004020_040 Hb_004020_040 Hb_001153_210--Hb_004020_040 Hb_000339_040 Hb_000339_040 Hb_001153_210--Hb_000339_040 Hb_000085_210 Hb_000085_210 Hb_000111_170--Hb_000085_210 Hb_000363_310 Hb_000363_310 Hb_000111_170--Hb_000363_310 Hb_001221_440 Hb_001221_440 Hb_000111_170--Hb_001221_440 Hb_000111_170--Hb_005288_070 Hb_183433_010 Hb_183433_010 Hb_000111_170--Hb_183433_010 Hb_021943_080--Hb_001158_160 Hb_001089_070 Hb_001089_070 Hb_021943_080--Hb_001089_070 Hb_016777_040 Hb_016777_040 Hb_021943_080--Hb_016777_040 Hb_077026_010 Hb_077026_010 Hb_021943_080--Hb_077026_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.24938 3.66169 6.64069 4.34658 3.68383 4.42062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.7179 3.28231 1.68462 2.95282 5.31123

CAGE analysis