Hb_000120_240

Information

Type -
Description -
Location Contig120: 149537-161583
Sequence    

Annotation

kegg
ID rcu:RCOM_0612710
description hypothetical protein
nr
ID XP_012067294.1
description PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
swissprot
ID Q6ZPJ0
description Testis-expressed sequence 2 protein OS=Mus musculus GN=Tex2 PE=1 SV=2
trembl
ID A0A067LGJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08445 PE=4 SV=1
Gene Ontology
ID GO:0016021
description testis-expressed sequence 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06086: 149556-161270 , PASA_asmbl_06087: 152783-152964 , PASA_asmbl_06089: 161390-161565
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_240 0.0 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
2 Hb_004449_220 0.0774734151 transcription factor TF Family: C2H2 PREDICTED: uncharacterized zinc finger protein At4g06634 [Jatropha curcas]
3 Hb_000956_130 0.0979980337 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
4 Hb_000625_020 0.0999628361 - - conserved hypothetical protein [Ricinus communis]
5 Hb_057183_040 0.1027040338 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
6 Hb_005662_030 0.1029526607 - - protein with unknown function [Ricinus communis]
7 Hb_000028_470 0.1061160224 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
8 Hb_000205_120 0.1071057854 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
9 Hb_029920_050 0.1074786001 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
10 Hb_109842_010 0.1075865775 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
11 Hb_000990_080 0.1083270324 - - gulonolactone oxidase, putative [Ricinus communis]
12 Hb_116349_160 0.1095637016 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
13 Hb_003641_050 0.1105189672 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
14 Hb_024714_020 0.1106671701 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_012977_010 0.1107303538 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
16 Hb_000761_020 0.1115771721 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
17 Hb_000204_040 0.1138297721 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
18 Hb_000000_080 0.1139816727 - - lipoate-protein ligase B, putative [Ricinus communis]
19 Hb_000001_020 0.114364873 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
20 Hb_001840_080 0.1145208763 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]

Gene co-expression network

sample Hb_000120_240 Hb_000120_240 Hb_004449_220 Hb_004449_220 Hb_000120_240--Hb_004449_220 Hb_000956_130 Hb_000956_130 Hb_000120_240--Hb_000956_130 Hb_000625_020 Hb_000625_020 Hb_000120_240--Hb_000625_020 Hb_057183_040 Hb_057183_040 Hb_000120_240--Hb_057183_040 Hb_005662_030 Hb_005662_030 Hb_000120_240--Hb_005662_030 Hb_000028_470 Hb_000028_470 Hb_000120_240--Hb_000028_470 Hb_001969_040 Hb_001969_040 Hb_004449_220--Hb_001969_040 Hb_000347_080 Hb_000347_080 Hb_004449_220--Hb_000347_080 Hb_000186_280 Hb_000186_280 Hb_004449_220--Hb_000186_280 Hb_000205_120 Hb_000205_120 Hb_004449_220--Hb_000205_120 Hb_004678_060 Hb_004678_060 Hb_004449_220--Hb_004678_060 Hb_028358_010 Hb_028358_010 Hb_000956_130--Hb_028358_010 Hb_116349_160 Hb_116349_160 Hb_000956_130--Hb_116349_160 Hb_004007_160 Hb_004007_160 Hb_000956_130--Hb_004007_160 Hb_000761_020 Hb_000761_020 Hb_000956_130--Hb_000761_020 Hb_029920_050 Hb_029920_050 Hb_000956_130--Hb_029920_050 Hb_004324_280 Hb_004324_280 Hb_000625_020--Hb_004324_280 Hb_109842_010 Hb_109842_010 Hb_000625_020--Hb_109842_010 Hb_000165_030 Hb_000165_030 Hb_000625_020--Hb_000165_030 Hb_003609_040 Hb_003609_040 Hb_000625_020--Hb_003609_040 Hb_000162_090 Hb_000162_090 Hb_000625_020--Hb_000162_090 Hb_008453_150 Hb_008453_150 Hb_057183_040--Hb_008453_150 Hb_057183_040--Hb_000028_470 Hb_001140_200 Hb_001140_200 Hb_057183_040--Hb_001140_200 Hb_001823_100 Hb_001823_100 Hb_057183_040--Hb_001823_100 Hb_003060_070 Hb_003060_070 Hb_057183_040--Hb_003060_070 Hb_001862_190 Hb_001862_190 Hb_005662_030--Hb_001862_190 Hb_000620_010 Hb_000620_010 Hb_005662_030--Hb_000620_010 Hb_000184_110 Hb_000184_110 Hb_005662_030--Hb_000184_110 Hb_000028_610 Hb_000028_610 Hb_005662_030--Hb_000028_610 Hb_006065_020 Hb_006065_020 Hb_005662_030--Hb_006065_020 Hb_001017_040 Hb_001017_040 Hb_005662_030--Hb_001017_040 Hb_005754_020 Hb_005754_020 Hb_000028_470--Hb_005754_020 Hb_178968_150 Hb_178968_150 Hb_000028_470--Hb_178968_150 Hb_001493_100 Hb_001493_100 Hb_000028_470--Hb_001493_100 Hb_002377_040 Hb_002377_040 Hb_000028_470--Hb_002377_040 Hb_001673_120 Hb_001673_120 Hb_000028_470--Hb_001673_120 Hb_000784_090 Hb_000784_090 Hb_000028_470--Hb_000784_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.8238 8.07107 11.9681 13.4634 27.7018 39.1881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.3843 20.5726 21.5589 6.52557 7.32999

CAGE analysis