Hb_000120_280

Information

Type -
Description -
Location Contig120: 197854-205464
Sequence    

Annotation

kegg
ID rcu:RCOM_0659690
description protein transport protein sec23, putative
nr
ID XP_012087535.1
description PREDICTED: protein transport protein SEC23 [Jatropha curcas]
swissprot
ID Q4PE39
description Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1
trembl
ID B9SKJ9
description Protein transport protein sec23, putative OS=Ricinus communis GN=RCOM_0659690 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06098: 197994-205465
cDNA
(Sanger)
(ID:Location)		 004_H20.ab1: 198000-198953 , 029_P11.ab1: 198000-198612 , 041_N22.ab1: 198000-198788

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_280 0.0 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
2 Hb_004267_040 0.0486933041 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
3 Hb_000011_100 0.0561589918 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
4 Hb_000477_050 0.060442947 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
5 Hb_183510_020 0.0642037458 - - coated vesicle membrane protein, putative [Ricinus communis]
6 Hb_001009_320 0.0646281618 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
7 Hb_002681_090 0.0646889924 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
8 Hb_007657_020 0.065078589 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
9 Hb_000635_030 0.0650826066 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
10 Hb_000398_080 0.0680866473 - - tip120, putative [Ricinus communis]
11 Hb_000803_270 0.0691768396 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
12 Hb_000460_080 0.0692104558 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
13 Hb_116349_070 0.0696865173 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
14 Hb_133702_030 0.0702777954 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
15 Hb_003861_050 0.0708075166 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
16 Hb_004586_220 0.07089353 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
17 Hb_013399_020 0.0709843666 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
18 Hb_000182_040 0.0730122095 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
19 Hb_003436_020 0.073434643 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
20 Hb_016777_040 0.0734896473 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]

Gene co-expression network

sample Hb_000120_280 Hb_000120_280 Hb_004267_040 Hb_004267_040 Hb_000120_280--Hb_004267_040 Hb_000011_100 Hb_000011_100 Hb_000120_280--Hb_000011_100 Hb_000477_050 Hb_000477_050 Hb_000120_280--Hb_000477_050 Hb_183510_020 Hb_183510_020 Hb_000120_280--Hb_183510_020 Hb_001009_320 Hb_001009_320 Hb_000120_280--Hb_001009_320 Hb_002681_090 Hb_002681_090 Hb_000120_280--Hb_002681_090 Hb_004267_040--Hb_000011_100 Hb_000563_130 Hb_000563_130 Hb_004267_040--Hb_000563_130 Hb_005588_090 Hb_005588_090 Hb_004267_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_004267_040--Hb_000398_080 Hb_000603_030 Hb_000603_030 Hb_004267_040--Hb_000603_030 Hb_000710_040 Hb_000710_040 Hb_000011_100--Hb_000710_040 Hb_001430_080 Hb_001430_080 Hb_000011_100--Hb_001430_080 Hb_000011_100--Hb_000398_080 Hb_000011_100--Hb_000563_130 Hb_002989_020 Hb_002989_020 Hb_000477_050--Hb_002989_020 Hb_004109_320 Hb_004109_320 Hb_000477_050--Hb_004109_320 Hb_000477_050--Hb_001009_320 Hb_000460_080 Hb_000460_080 Hb_000477_050--Hb_000460_080 Hb_003528_030 Hb_003528_030 Hb_000477_050--Hb_003528_030 Hb_000025_690 Hb_000025_690 Hb_183510_020--Hb_000025_690 Hb_005867_070 Hb_005867_070 Hb_183510_020--Hb_005867_070 Hb_183510_020--Hb_000011_100 Hb_000006_040 Hb_000006_040 Hb_183510_020--Hb_000006_040 Hb_183510_020--Hb_000710_040 Hb_001301_150 Hb_001301_150 Hb_183510_020--Hb_001301_150 Hb_000006_010 Hb_000006_010 Hb_001009_320--Hb_000006_010 Hb_000522_170 Hb_000522_170 Hb_001009_320--Hb_000522_170 Hb_015807_050 Hb_015807_050 Hb_001009_320--Hb_015807_050 Hb_000313_220 Hb_000313_220 Hb_001009_320--Hb_000313_220 Hb_007657_020 Hb_007657_020 Hb_002681_090--Hb_007657_020 Hb_002311_290 Hb_002311_290 Hb_002681_090--Hb_002311_290 Hb_002681_090--Hb_000603_030 Hb_002815_030 Hb_002815_030 Hb_002681_090--Hb_002815_030 Hb_000170_090 Hb_000170_090 Hb_002681_090--Hb_000170_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.70497 9.37389 10.4211 10.9644 11.3917 8.36334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.93877 6.21505 6.53186 13.1779 8.11503

CAGE analysis