Hb_000120_320

Information

Type -
Description -
Location Contig120: 230182-232763
Sequence    

Annotation

kegg
ID rcu:RCOM_0613730
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002528537.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9FG33
description Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana GN=LECRKS5 PE=2 SV=1
trembl
ID B9SRB8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0613730 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable l-type lectin-domain containing receptor kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06109: 230933-231559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_320 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_149055_010 0.0981717506 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
3 Hb_000181_260 0.0989812041 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
4 Hb_001677_090 0.0996717997 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
5 Hb_002641_140 0.1009971017 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_019026_050 0.1012491524 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001138_070 0.1026571532 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
8 Hb_004079_100 0.1031256955 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
9 Hb_001141_160 0.1034145151 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
10 Hb_002553_070 0.1034221923 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
11 Hb_003656_090 0.1079482765 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
12 Hb_001269_400 0.1110438317 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
13 Hb_008021_040 0.1172427029 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
14 Hb_007632_130 0.1180518188 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
15 Hb_007479_080 0.1201784502 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
16 Hb_008175_050 0.1211919911 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
17 Hb_007237_080 0.1215623701 - - amino acid transporter, putative [Ricinus communis]
18 Hb_007625_030 0.1224441658 - - unknown [Medicago truncatula]
19 Hb_005357_120 0.1240950313 transcription factor TF Family: MYB-related -
20 Hb_003411_020 0.124249434 - - alpha-glucosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000120_320 Hb_000120_320 Hb_149055_010 Hb_149055_010 Hb_000120_320--Hb_149055_010 Hb_000181_260 Hb_000181_260 Hb_000120_320--Hb_000181_260 Hb_001677_090 Hb_001677_090 Hb_000120_320--Hb_001677_090 Hb_002641_140 Hb_002641_140 Hb_000120_320--Hb_002641_140 Hb_019026_050 Hb_019026_050 Hb_000120_320--Hb_019026_050 Hb_001138_070 Hb_001138_070 Hb_000120_320--Hb_001138_070 Hb_001269_400 Hb_001269_400 Hb_149055_010--Hb_001269_400 Hb_149055_010--Hb_001138_070 Hb_000329_010 Hb_000329_010 Hb_149055_010--Hb_000329_010 Hb_002809_080 Hb_002809_080 Hb_149055_010--Hb_002809_080 Hb_000645_160 Hb_000645_160 Hb_149055_010--Hb_000645_160 Hb_002811_110 Hb_002811_110 Hb_000181_260--Hb_002811_110 Hb_139461_010 Hb_139461_010 Hb_000181_260--Hb_139461_010 Hb_000571_060 Hb_000571_060 Hb_000181_260--Hb_000571_060 Hb_008021_040 Hb_008021_040 Hb_000181_260--Hb_008021_040 Hb_002553_070 Hb_002553_070 Hb_000181_260--Hb_002553_070 Hb_001677_090--Hb_149055_010 Hb_008175_050 Hb_008175_050 Hb_001677_090--Hb_008175_050 Hb_001677_090--Hb_001138_070 Hb_033772_060 Hb_033772_060 Hb_001677_090--Hb_033772_060 Hb_000011_370 Hb_000011_370 Hb_001677_090--Hb_000011_370 Hb_002641_140--Hb_008021_040 Hb_000411_020 Hb_000411_020 Hb_002641_140--Hb_000411_020 Hb_189208_050 Hb_189208_050 Hb_002641_140--Hb_189208_050 Hb_000098_260 Hb_000098_260 Hb_002641_140--Hb_000098_260 Hb_005357_120 Hb_005357_120 Hb_002641_140--Hb_005357_120 Hb_012787_060 Hb_012787_060 Hb_002641_140--Hb_012787_060 Hb_003847_050 Hb_003847_050 Hb_019026_050--Hb_003847_050 Hb_023956_010 Hb_023956_010 Hb_019026_050--Hb_023956_010 Hb_006846_030 Hb_006846_030 Hb_019026_050--Hb_006846_030 Hb_019026_050--Hb_002553_070 Hb_007632_130 Hb_007632_130 Hb_019026_050--Hb_007632_130 Hb_001138_070--Hb_008175_050 Hb_001138_070--Hb_000645_160 Hb_003656_090 Hb_003656_090 Hb_001138_070--Hb_003656_090 Hb_001138_070--Hb_000329_010 Hb_001138_070--Hb_002641_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0186573 2.13964 2.9117 6.71297 0 0.123173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0166756 0.0316692 3.54087 2.61211

CAGE analysis