Hb_000120_360

Information

Type -
Description -
Location Contig120: 248561-249445
Sequence    

Annotation

kegg
ID rcu:RCOM_0613690
description hypothetical protein
nr
ID XP_002528533.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LSF6
description Vacuolar iron transporter homolog 2.1 OS=Arabidopsis thaliana GN=At3g25190 PE=1 SV=1
trembl
ID B9SRB4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0613690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_360 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001047_130 0.1571266089 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
3 Hb_010174_010 0.1629166889 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
4 Hb_028285_030 0.1750498381 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
5 Hb_000175_610 0.1893453649 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
6 Hb_002245_040 0.1954727263 - - thioredoxin h [Hevea brasiliensis]
7 Hb_001780_070 0.1982542382 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
8 Hb_001741_090 0.209736372 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
9 Hb_000235_010 0.2136032915 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
10 Hb_000001_120 0.2157917096 - - hypothetical protein JCGZ_03063 [Jatropha curcas]
11 Hb_104010_010 0.2180096212 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
12 Hb_003050_070 0.2265995965 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000567_280 0.2278600564 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
14 Hb_003286_020 0.2293766449 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
15 Hb_000545_170 0.2323580119 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
16 Hb_000453_300 0.2332652348 - - latex cystatin [Hevea brasiliensis]
17 Hb_003371_100 0.2373534626 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
18 Hb_128524_010 0.2400989875 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
19 Hb_001507_070 0.2492913813 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001959_260 0.2525485575 - - -

Gene co-expression network

sample Hb_000120_360 Hb_000120_360 Hb_001047_130 Hb_001047_130 Hb_000120_360--Hb_001047_130 Hb_010174_010 Hb_010174_010 Hb_000120_360--Hb_010174_010 Hb_028285_030 Hb_028285_030 Hb_000120_360--Hb_028285_030 Hb_000175_610 Hb_000175_610 Hb_000120_360--Hb_000175_610 Hb_002245_040 Hb_002245_040 Hb_000120_360--Hb_002245_040 Hb_001780_070 Hb_001780_070 Hb_000120_360--Hb_001780_070 Hb_001741_090 Hb_001741_090 Hb_001047_130--Hb_001741_090 Hb_000545_170 Hb_000545_170 Hb_001047_130--Hb_000545_170 Hb_001047_130--Hb_000175_610 Hb_104010_010 Hb_104010_010 Hb_001047_130--Hb_104010_010 Hb_000563_560 Hb_000563_560 Hb_001047_130--Hb_000563_560 Hb_010174_010--Hb_028285_030 Hb_000235_010 Hb_000235_010 Hb_010174_010--Hb_000235_010 Hb_128524_010 Hb_128524_010 Hb_010174_010--Hb_128524_010 Hb_002918_040 Hb_002918_040 Hb_010174_010--Hb_002918_040 Hb_000792_120 Hb_000792_120 Hb_010174_010--Hb_000792_120 Hb_028285_030--Hb_128524_010 Hb_028285_030--Hb_002245_040 Hb_000453_300 Hb_000453_300 Hb_028285_030--Hb_000453_300 Hb_000387_060 Hb_000387_060 Hb_028285_030--Hb_000387_060 Hb_003050_070 Hb_003050_070 Hb_028285_030--Hb_003050_070 Hb_011004_010 Hb_011004_010 Hb_000175_610--Hb_011004_010 Hb_000260_580 Hb_000260_580 Hb_000175_610--Hb_000260_580 Hb_003371_100 Hb_003371_100 Hb_000175_610--Hb_003371_100 Hb_000742_270 Hb_000742_270 Hb_000175_610--Hb_000742_270 Hb_001507_070 Hb_001507_070 Hb_000175_610--Hb_001507_070 Hb_148121_010 Hb_148121_010 Hb_000175_610--Hb_148121_010 Hb_002245_040--Hb_128524_010 Hb_000270_150 Hb_000270_150 Hb_002245_040--Hb_000270_150 Hb_135585_010 Hb_135585_010 Hb_002245_040--Hb_135585_010 Hb_007913_040 Hb_007913_040 Hb_002245_040--Hb_007913_040 Hb_001780_070--Hb_000175_610 Hb_003286_020 Hb_003286_020 Hb_001780_070--Hb_003286_020 Hb_005616_030 Hb_005616_030 Hb_001780_070--Hb_005616_030 Hb_001780_070--Hb_001741_090 Hb_075449_050 Hb_075449_050 Hb_001780_070--Hb_075449_050 Hb_000107_070 Hb_000107_070 Hb_001780_070--Hb_000107_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10306 0.125266 0.0398308 0.0650682 0.0517228 0.113699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18846 0.558162 0.594048 0.0375327 0

CAGE analysis