Hb_000120_370

Information

Type -
Description -
Location Contig120: 250958-260411
Sequence    

Annotation

kegg
ID rcu:RCOM_0613570
description type 2 diacylglycerol acyltransferase (EC:2.3.1.20)
nr
ID XP_002528531.1
description type 2 diacylglycerol acyltransferase [Ricinus communis]
swissprot
ID Q9ASU1
description Diacylglycerol O-acyltransferase 2 OS=Arabidopsis thaliana GN=DGAT2 PE=2 SV=1
trembl
ID A1A442
description Diacylglycerol acyltransferase OS=Ricinus communis GN=DGAT2 PE=2 SV=1
Gene Ontology
ID GO:0005783
description type 2 diacylglycerol acyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06115: 256890-260212 , PASA_asmbl_06116: 250819-255426 , PASA_asmbl_06117: 250819-260249 , PASA_asmbl_06118: 251118-260173 , PASA_asmbl_06120: 253992-254279
cDNA
(Sanger)
(ID:Location)		 004_G22.ab1: 256890-259299 , 011_N13.ab1: 250819-252137

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_370 0.0 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
2 Hb_000115_150 0.0610137267 - - PREDICTED: IST1 homolog [Jatropha curcas]
3 Hb_005725_130 0.0671885888 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
4 Hb_001828_180 0.0754841914 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
5 Hb_002301_100 0.0781365476 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
6 Hb_000167_010 0.0798813937 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005648_010 0.0799792405 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
8 Hb_002093_060 0.0807684043 - - phosphoprotein phosphatase, putative [Ricinus communis]
9 Hb_007481_010 0.0813070591 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
10 Hb_000329_060 0.0818071692 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
11 Hb_003878_150 0.083892312 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
12 Hb_000663_060 0.0842685307 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
13 Hb_012733_040 0.0845459519 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
14 Hb_001242_120 0.084950204 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
15 Hb_001269_600 0.0856370214 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_003988_050 0.0857886146 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
17 Hb_004545_110 0.086003384 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
18 Hb_062537_010 0.0868239158 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
19 Hb_023001_040 0.0872904573 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
20 Hb_003058_120 0.0884344263 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000120_370 Hb_000120_370 Hb_000115_150 Hb_000115_150 Hb_000120_370--Hb_000115_150 Hb_005725_130 Hb_005725_130 Hb_000120_370--Hb_005725_130 Hb_001828_180 Hb_001828_180 Hb_000120_370--Hb_001828_180 Hb_002301_100 Hb_002301_100 Hb_000120_370--Hb_002301_100 Hb_000167_010 Hb_000167_010 Hb_000120_370--Hb_000167_010 Hb_005648_010 Hb_005648_010 Hb_000120_370--Hb_005648_010 Hb_003988_050 Hb_003988_050 Hb_000115_150--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000115_150--Hb_062537_010 Hb_001104_100 Hb_001104_100 Hb_000115_150--Hb_001104_100 Hb_000115_150--Hb_005648_010 Hb_000025_190 Hb_000025_190 Hb_000115_150--Hb_000025_190 Hb_003878_150 Hb_003878_150 Hb_005725_130--Hb_003878_150 Hb_001242_120 Hb_001242_120 Hb_005725_130--Hb_001242_120 Hb_009569_040 Hb_009569_040 Hb_005725_130--Hb_009569_040 Hb_002928_090 Hb_002928_090 Hb_005725_130--Hb_002928_090 Hb_001662_100 Hb_001662_100 Hb_005725_130--Hb_001662_100 Hb_000663_060 Hb_000663_060 Hb_001828_180--Hb_000663_060 Hb_000363_190 Hb_000363_190 Hb_001828_180--Hb_000363_190 Hb_000778_010 Hb_000778_010 Hb_001828_180--Hb_000778_010 Hb_023001_040 Hb_023001_040 Hb_001828_180--Hb_023001_040 Hb_001828_180--Hb_002301_100 Hb_002439_010 Hb_002439_010 Hb_001828_180--Hb_002439_010 Hb_000398_060 Hb_000398_060 Hb_002301_100--Hb_000398_060 Hb_012733_040 Hb_012733_040 Hb_002301_100--Hb_012733_040 Hb_002301_100--Hb_000363_190 Hb_002301_100--Hb_001242_120 Hb_001493_150 Hb_001493_150 Hb_002301_100--Hb_001493_150 Hb_003058_120 Hb_003058_120 Hb_000167_010--Hb_003058_120 Hb_000167_010--Hb_002439_010 Hb_000069_720 Hb_000069_720 Hb_000167_010--Hb_000069_720 Hb_003883_060 Hb_003883_060 Hb_000167_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_000167_010--Hb_001301_150 Hb_000167_010--Hb_023001_040 Hb_002093_060 Hb_002093_060 Hb_005648_010--Hb_002093_060 Hb_002357_060 Hb_002357_060 Hb_005648_010--Hb_002357_060 Hb_004880_150 Hb_004880_150 Hb_005648_010--Hb_004880_150 Hb_005648_010--Hb_000025_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.35091 6.06848 11.8453 19.5653 8.81988 7.36622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4025 10.3293 8.67494 17.2916 14.2031

CAGE analysis