Hb_000120_420

Information

Type -
Description -
Location Contig120: 302978-313128
Sequence    

Annotation

kegg
ID rcu:RCOM_0613120
description transcription factor, putative
nr
ID XP_012087576.1
description PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
swissprot
ID Q940Y3
description AT-rich interactive domain-containing protein 3 OS=Arabidopsis thaliana GN=ARID3 PE=1 SV=1
trembl
ID A0A067JQ21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24296 PE=3 SV=1
Gene Ontology
ID GO:0005634
description at-rich interactive domain-containing protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06126: 303069-304604 , PASA_asmbl_06128: 312021-312488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_420 0.0 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
2 Hb_011909_060 0.0667604031 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
3 Hb_000363_280 0.0731568265 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
4 Hb_000227_310 0.0751629509 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
5 Hb_000264_080 0.0792573914 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
6 Hb_167381_020 0.0864704275 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
7 Hb_003430_030 0.0895686106 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
8 Hb_000336_110 0.089950867 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
9 Hb_008406_040 0.0928883954 - - -
10 Hb_018301_010 0.0932293836 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
11 Hb_009771_100 0.0948478745 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
12 Hb_118840_050 0.0954092556 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
13 Hb_012114_050 0.0964092693 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
14 Hb_001141_370 0.0968634333 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
15 Hb_000061_490 0.1004137504 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
16 Hb_007576_220 0.1006288821 - - PREDICTED: kanadaptin [Jatropha curcas]
17 Hb_000926_010 0.100754436 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
18 Hb_002073_280 0.1026754819 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
19 Hb_003470_030 0.1027104187 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
20 Hb_002282_060 0.1034887756 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000120_420 Hb_000120_420 Hb_011909_060 Hb_011909_060 Hb_000120_420--Hb_011909_060 Hb_000363_280 Hb_000363_280 Hb_000120_420--Hb_000363_280 Hb_000227_310 Hb_000227_310 Hb_000120_420--Hb_000227_310 Hb_000264_080 Hb_000264_080 Hb_000120_420--Hb_000264_080 Hb_167381_020 Hb_167381_020 Hb_000120_420--Hb_167381_020 Hb_003430_030 Hb_003430_030 Hb_000120_420--Hb_003430_030 Hb_011909_060--Hb_000363_280 Hb_009771_100 Hb_009771_100 Hb_011909_060--Hb_009771_100 Hb_031711_010 Hb_031711_010 Hb_011909_060--Hb_031711_010 Hb_001141_370 Hb_001141_370 Hb_011909_060--Hb_001141_370 Hb_002997_160 Hb_002997_160 Hb_011909_060--Hb_002997_160 Hb_000363_280--Hb_003430_030 Hb_000336_110 Hb_000336_110 Hb_000363_280--Hb_000336_110 Hb_005054_190 Hb_005054_190 Hb_000363_280--Hb_005054_190 Hb_000363_280--Hb_000264_080 Hb_007017_070 Hb_007017_070 Hb_000227_310--Hb_007017_070 Hb_030545_030 Hb_030545_030 Hb_000227_310--Hb_030545_030 Hb_000926_010 Hb_000926_010 Hb_000227_310--Hb_000926_010 Hb_000227_310--Hb_000264_080 Hb_007576_220 Hb_007576_220 Hb_000227_310--Hb_007576_220 Hb_004195_120 Hb_004195_120 Hb_000227_310--Hb_004195_120 Hb_000264_080--Hb_000926_010 Hb_000061_490 Hb_000061_490 Hb_000264_080--Hb_000061_490 Hb_004410_070 Hb_004410_070 Hb_000264_080--Hb_004410_070 Hb_000264_080--Hb_000336_110 Hb_000264_080--Hb_007017_070 Hb_001307_010 Hb_001307_010 Hb_167381_020--Hb_001307_010 Hb_000116_510 Hb_000116_510 Hb_167381_020--Hb_000116_510 Hb_118840_050 Hb_118840_050 Hb_167381_020--Hb_118840_050 Hb_167381_020--Hb_000336_110 Hb_167381_020--Hb_011909_060 Hb_003430_030--Hb_005054_190 Hb_005610_080 Hb_005610_080 Hb_003430_030--Hb_005610_080 Hb_000024_120 Hb_000024_120 Hb_003430_030--Hb_000024_120 Hb_000345_490 Hb_000345_490 Hb_003430_030--Hb_000345_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.9608 88.4318 37.3078 22.9861 41.3855 35.3294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3473 10.6007 9.12185 25.2179 16.2356

CAGE analysis