Hb_000120_460

Information

Type -
Description -
Location Contig120: 340334-343753
Sequence    

Annotation

kegg
ID rcu:RCOM_0612980
description disulfide oxidoreductase, putative (EC:1.8.1.9)
nr
ID XP_012087579.1
description PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
swissprot
ID Q39242
description Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2
trembl
ID A0A067JZD3
description Thioredoxin reductase OS=Jatropha curcas GN=JCGZ_24297 PE=3 SV=1
Gene Ontology
ID GO:0005737
description thioredoxin reductase ntrb-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06134: 340538-343873
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_460 0.0 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
2 Hb_000976_170 0.0481465758 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
3 Hb_025240_040 0.0682748801 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
4 Hb_004218_110 0.0700452713 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
5 Hb_003697_040 0.0713496822 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
6 Hb_108350_010 0.0728028354 - - GTP-binding protein erg, putative [Ricinus communis]
7 Hb_001545_170 0.072829766 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
8 Hb_012490_070 0.0738537187 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000092_170 0.0751653314 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
10 Hb_000783_020 0.0755869087 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
11 Hb_000250_060 0.0781292827 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
12 Hb_001726_020 0.078397772 - - PREDICTED: endophilin-A1 [Jatropha curcas]
13 Hb_000120_470 0.0791537399 - - hypothetical protein VITISV_017372 [Vitis vinifera]
14 Hb_003053_020 0.0804817949 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
15 Hb_005539_280 0.0815611387 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
16 Hb_058999_020 0.0817377746 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
17 Hb_004254_120 0.0818522181 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003688_150 0.0822945248 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
19 Hb_000058_060 0.0826404767 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
20 Hb_127552_030 0.0829260581 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_460 Hb_000120_460 Hb_000976_170 Hb_000976_170 Hb_000120_460--Hb_000976_170 Hb_025240_040 Hb_025240_040 Hb_000120_460--Hb_025240_040 Hb_004218_110 Hb_004218_110 Hb_000120_460--Hb_004218_110 Hb_003697_040 Hb_003697_040 Hb_000120_460--Hb_003697_040 Hb_108350_010 Hb_108350_010 Hb_000120_460--Hb_108350_010 Hb_001545_170 Hb_001545_170 Hb_000120_460--Hb_001545_170 Hb_000976_170--Hb_108350_010 Hb_002183_090 Hb_002183_090 Hb_000976_170--Hb_002183_090 Hb_000085_050 Hb_000085_050 Hb_000976_170--Hb_000085_050 Hb_000976_170--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_000976_170--Hb_127552_030 Hb_025240_040--Hb_004218_110 Hb_004254_120 Hb_004254_120 Hb_025240_040--Hb_004254_120 Hb_015934_070 Hb_015934_070 Hb_025240_040--Hb_015934_070 Hb_025240_040--Hb_127552_030 Hb_002759_060 Hb_002759_060 Hb_025240_040--Hb_002759_060 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220 Hb_004218_110--Hb_002759_060 Hb_001369_690 Hb_001369_690 Hb_004218_110--Hb_001369_690 Hb_004218_110--Hb_004254_120 Hb_002005_020 Hb_002005_020 Hb_004218_110--Hb_002005_020 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_004934_100 Hb_004934_100 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020 Hb_108350_010--Hb_000085_050 Hb_108350_010--Hb_002183_090 Hb_058999_020 Hb_058999_020 Hb_108350_010--Hb_058999_020 Hb_000092_170 Hb_000092_170 Hb_108350_010--Hb_000092_170 Hb_012490_070 Hb_012490_070 Hb_001545_170--Hb_012490_070 Hb_089032_030 Hb_089032_030 Hb_001545_170--Hb_089032_030 Hb_003349_090 Hb_003349_090 Hb_001545_170--Hb_003349_090 Hb_010812_120 Hb_010812_120 Hb_001545_170--Hb_010812_120 Hb_002676_090 Hb_002676_090 Hb_001545_170--Hb_002676_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.94616 6.85666 6.21212 8.57886 8.90888 14.7626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2487 20.1085 18.0952 13.7529 9.67768

CAGE analysis