Hb_000120_470

Information

Type -
Description -
Location Contig120: 340541-343236
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAN62137.1
description hypothetical protein VITISV_017372 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C6E0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017372 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_470 0.0 - - hypothetical protein VITISV_017372 [Vitis vinifera]
2 Hb_001758_100 0.051438177 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
3 Hb_008900_010 0.0628073057 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
4 Hb_007416_320 0.0673740999 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005054_350 0.0689910629 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
6 Hb_058999_020 0.0698060923 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
7 Hb_000058_060 0.0736836978 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
8 Hb_002182_080 0.0783835193 - - 3-5 exonuclease, putative [Ricinus communis]
9 Hb_005539_280 0.0785555828 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
10 Hb_000120_460 0.0791537399 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
11 Hb_003615_010 0.0794367271 - - 60S ribosomal protein L8, putative [Ricinus communis]
12 Hb_172426_040 0.0796022831 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
13 Hb_000465_460 0.0804861146 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
14 Hb_004453_050 0.0816002442 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
15 Hb_005618_170 0.0817377094 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
16 Hb_007416_280 0.0817907001 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003092_040 0.0818544682 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
18 Hb_000215_110 0.0819554684 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
19 Hb_108350_010 0.0821088908 - - GTP-binding protein erg, putative [Ricinus communis]
20 Hb_003918_010 0.0821271892 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000120_470 Hb_000120_470 Hb_001758_100 Hb_001758_100 Hb_000120_470--Hb_001758_100 Hb_008900_010 Hb_008900_010 Hb_000120_470--Hb_008900_010 Hb_007416_320 Hb_007416_320 Hb_000120_470--Hb_007416_320 Hb_005054_350 Hb_005054_350 Hb_000120_470--Hb_005054_350 Hb_058999_020 Hb_058999_020 Hb_000120_470--Hb_058999_020 Hb_000058_060 Hb_000058_060 Hb_000120_470--Hb_000058_060 Hb_000504_140 Hb_000504_140 Hb_001758_100--Hb_000504_140 Hb_001758_100--Hb_008900_010 Hb_000465_460 Hb_000465_460 Hb_001758_100--Hb_000465_460 Hb_000317_240 Hb_000317_240 Hb_001758_100--Hb_000317_240 Hb_000757_060 Hb_000757_060 Hb_001758_100--Hb_000757_060 Hb_008900_010--Hb_000504_140 Hb_002284_240 Hb_002284_240 Hb_008900_010--Hb_002284_240 Hb_000146_070 Hb_000146_070 Hb_008900_010--Hb_000146_070 Hb_003918_010 Hb_003918_010 Hb_008900_010--Hb_003918_010 Hb_005618_170 Hb_005618_170 Hb_007416_320--Hb_005618_170 Hb_001633_210 Hb_001633_210 Hb_007416_320--Hb_001633_210 Hb_007416_320--Hb_000058_060 Hb_000062_220 Hb_000062_220 Hb_007416_320--Hb_000062_220 Hb_000876_070 Hb_000876_070 Hb_007416_320--Hb_000876_070 Hb_000768_090 Hb_000768_090 Hb_005054_350--Hb_000768_090 Hb_003435_020 Hb_003435_020 Hb_005054_350--Hb_003435_020 Hb_005054_350--Hb_001758_100 Hb_000032_380 Hb_000032_380 Hb_005054_350--Hb_000032_380 Hb_002078_140 Hb_002078_140 Hb_005054_350--Hb_002078_140 Hb_058999_020--Hb_000757_060 Hb_005779_060 Hb_005779_060 Hb_058999_020--Hb_005779_060 Hb_000227_080 Hb_000227_080 Hb_058999_020--Hb_000227_080 Hb_000215_110 Hb_000215_110 Hb_058999_020--Hb_000215_110 Hb_058999_020--Hb_000465_460 Hb_002044_080 Hb_002044_080 Hb_058999_020--Hb_002044_080 Hb_000009_460 Hb_000009_460 Hb_000058_060--Hb_000009_460 Hb_005289_030 Hb_005289_030 Hb_000058_060--Hb_005289_030 Hb_159809_020 Hb_159809_020 Hb_000058_060--Hb_159809_020 Hb_002759_060 Hb_002759_060 Hb_000058_060--Hb_002759_060 Hb_027073_040 Hb_027073_040 Hb_000058_060--Hb_027073_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0016 10.3098 9.43713 10.7586 10.1955 18.7076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.273 23.5732 18.233 16.3262 6.68597

CAGE analysis