Hb_000120_490

Information

Type -
Description -
Location Contig120: 363540-381873
Sequence    

Annotation

kegg
ID rcu:RCOM_0280960
description zinc finger protein, putative
nr
ID XP_012087588.1
description PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
swissprot
ID Q14149
description MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3
trembl
ID B9T2L4
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0280960 PE=4 SV=1
Gene Ontology
ID GO:0008270
description morc family cw-type zinc finger protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06138: 364556-364995 , PASA_asmbl_06139: 368573-368933 , PASA_asmbl_06140: 369351-369927 , PASA_asmbl_06141: 381371-381685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_490 0.0 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
2 Hb_061126_010 0.0958631612 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
3 Hb_074548_010 0.1018733714 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_007462_020 0.1041705639 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_121089_010 0.1077150798 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
6 Hb_002010_030 0.11086934 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
7 Hb_000697_020 0.1128182656 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
8 Hb_003373_050 0.1157669523 - - receptor protein kinase zmpk1, putative [Ricinus communis]
9 Hb_004017_030 0.1203160971 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
10 Hb_000345_400 0.1208597897 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000638_220 0.1223277388 - - PREDICTED: photosystem I reaction center subunit N, chloroplastic [Jatropha curcas]
12 Hb_001321_010 0.1224433213 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
13 Hb_000544_070 0.1227217257 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
14 Hb_000948_120 0.1234611022 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
15 Hb_000270_090 0.1253479519 - - nitrate transporter, putative [Ricinus communis]
16 Hb_004306_090 0.1266393989 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
17 Hb_063405_010 0.1285041399 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
18 Hb_000705_010 0.1288038966 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
19 Hb_060534_010 0.1299330986 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
20 Hb_003605_060 0.1303727995 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000120_490 Hb_000120_490 Hb_061126_010 Hb_061126_010 Hb_000120_490--Hb_061126_010 Hb_074548_010 Hb_074548_010 Hb_000120_490--Hb_074548_010 Hb_007462_020 Hb_007462_020 Hb_000120_490--Hb_007462_020 Hb_121089_010 Hb_121089_010 Hb_000120_490--Hb_121089_010 Hb_002010_030 Hb_002010_030 Hb_000120_490--Hb_002010_030 Hb_000697_020 Hb_000697_020 Hb_000120_490--Hb_000697_020 Hb_061126_010--Hb_000697_020 Hb_000705_010 Hb_000705_010 Hb_061126_010--Hb_000705_010 Hb_063405_010 Hb_063405_010 Hb_061126_010--Hb_063405_010 Hb_061126_010--Hb_002010_030 Hb_001172_150 Hb_001172_150 Hb_061126_010--Hb_001172_150 Hb_003605_060 Hb_003605_060 Hb_074548_010--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_074548_010--Hb_002485_050 Hb_005523_040 Hb_005523_040 Hb_074548_010--Hb_005523_040 Hb_000544_070 Hb_000544_070 Hb_074548_010--Hb_000544_070 Hb_002636_030 Hb_002636_030 Hb_074548_010--Hb_002636_030 Hb_005977_040 Hb_005977_040 Hb_074548_010--Hb_005977_040 Hb_004017_030 Hb_004017_030 Hb_007462_020--Hb_004017_030 Hb_003767_060 Hb_003767_060 Hb_007462_020--Hb_003767_060 Hb_001369_340 Hb_001369_340 Hb_007462_020--Hb_001369_340 Hb_000460_040 Hb_000460_040 Hb_007462_020--Hb_000460_040 Hb_000155_020 Hb_000155_020 Hb_007462_020--Hb_000155_020 Hb_000025_700 Hb_000025_700 Hb_007462_020--Hb_000025_700 Hb_000948_120 Hb_000948_120 Hb_121089_010--Hb_000948_120 Hb_003915_020 Hb_003915_020 Hb_121089_010--Hb_003915_020 Hb_003680_060 Hb_003680_060 Hb_121089_010--Hb_003680_060 Hb_004102_080 Hb_004102_080 Hb_121089_010--Hb_004102_080 Hb_001227_140 Hb_001227_140 Hb_121089_010--Hb_001227_140 Hb_002010_030--Hb_003767_060 Hb_002010_030--Hb_004017_030 Hb_002010_030--Hb_001369_340 Hb_004109_140 Hb_004109_140 Hb_002010_030--Hb_004109_140 Hb_046739_010 Hb_046739_010 Hb_002010_030--Hb_046739_010 Hb_005433_020 Hb_005433_020 Hb_002010_030--Hb_005433_020 Hb_016687_010 Hb_016687_010 Hb_000697_020--Hb_016687_010 Hb_000697_020--Hb_001172_150 Hb_000212_270 Hb_000212_270 Hb_000697_020--Hb_000212_270 Hb_000697_020--Hb_063405_010 Hb_000697_020--Hb_000705_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00912085 0.886802 3.24445 0.992441 0.0176705 0.0246546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.124309 0.0815108 0 0.233321 3.7635

CAGE analysis