Hb_000120_500

Information

Type -
Description -
Location Contig120: 382760-385998
Sequence    

Annotation

kegg
ID rcu:RCOM_0280940
description DNA binding protein, putative
nr
ID XP_012065434.1
description PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
swissprot
ID O22812
description AT-hook motif nuclear-localized protein 10 OS=Arabidopsis thaliana GN=AHL10 PE=1 SV=2
trembl
ID A0A067L5R2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22423 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06142: 382309-382947 , PASA_asmbl_06143: 383094-383268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_500 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
2 Hb_000956_030 0.0510469292 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
3 Hb_003434_060 0.0581269546 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
4 Hb_000390_060 0.0599704154 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
5 Hb_005883_050 0.0640007489 - - PREDICTED: transportin-3 [Jatropha curcas]
6 Hb_028639_060 0.0689936912 - - transporter, putative [Ricinus communis]
7 Hb_004198_010 0.0715997447 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
8 Hb_003602_040 0.0724808526 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_000204_040 0.0744520929 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
10 Hb_000134_090 0.075005402 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
11 Hb_000186_280 0.0771511204 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
12 Hb_000749_150 0.0779764729 - - -
13 Hb_006692_030 0.0785173139 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
14 Hb_061908_010 0.0792638193 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
15 Hb_000943_070 0.0812271898 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
16 Hb_000034_050 0.0825472083 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
17 Hb_002097_090 0.0826346815 - - Splicing factor 3A subunit, putative [Ricinus communis]
18 Hb_076787_010 0.0830292368 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
19 Hb_039837_010 0.0838117336 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
20 Hb_004204_200 0.0850334698 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_500 Hb_000120_500 Hb_000956_030 Hb_000956_030 Hb_000120_500--Hb_000956_030 Hb_003434_060 Hb_003434_060 Hb_000120_500--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000120_500--Hb_000390_060 Hb_005883_050 Hb_005883_050 Hb_000120_500--Hb_005883_050 Hb_028639_060 Hb_028639_060 Hb_000120_500--Hb_028639_060 Hb_004198_010 Hb_004198_010 Hb_000120_500--Hb_004198_010 Hb_000956_030--Hb_004198_010 Hb_000956_030--Hb_003434_060 Hb_002097_090 Hb_002097_090 Hb_000956_030--Hb_002097_090 Hb_004450_010 Hb_004450_010 Hb_000956_030--Hb_004450_010 Hb_000236_370 Hb_000236_370 Hb_000956_030--Hb_000236_370 Hb_003434_060--Hb_000390_060 Hb_003434_060--Hb_004198_010 Hb_003434_060--Hb_005883_050 Hb_000316_030 Hb_000316_030 Hb_003434_060--Hb_000316_030 Hb_000230_330 Hb_000230_330 Hb_000390_060--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000390_060--Hb_001584_110 Hb_000034_050 Hb_000034_050 Hb_000390_060--Hb_000034_050 Hb_000390_060--Hb_000316_030 Hb_071736_010 Hb_071736_010 Hb_005883_050--Hb_071736_010 Hb_005883_050--Hb_000390_060 Hb_005754_060 Hb_005754_060 Hb_005883_050--Hb_005754_060 Hb_004447_060 Hb_004447_060 Hb_005883_050--Hb_004447_060 Hb_001214_130 Hb_001214_130 Hb_028639_060--Hb_001214_130 Hb_003642_060 Hb_003642_060 Hb_028639_060--Hb_003642_060 Hb_028639_060--Hb_000236_370 Hb_000012_090 Hb_000012_090 Hb_028639_060--Hb_000012_090 Hb_000803_300 Hb_000803_300 Hb_028639_060--Hb_000803_300 Hb_001030_120 Hb_001030_120 Hb_028639_060--Hb_001030_120 Hb_000364_060 Hb_000364_060 Hb_004198_010--Hb_000364_060 Hb_004198_010--Hb_004450_010 Hb_003044_100 Hb_003044_100 Hb_004198_010--Hb_003044_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.18146 2.15835 1.55454 2.43385 5.57571 9.41211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.32226 3.95574 3.67419 2.43101 1.63481

CAGE analysis