Hb_000120_520

Information

Type -
Description -
Location Contig120: 401496-404861
Sequence    

Annotation

kegg
ID rcu:RCOM_0280590
description leucine-rich repeat-containing protein, putative (EC:3.1.3.16)
nr
ID XP_012065432.1
description PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
swissprot
ID Q9SVW8
description Plant intracellular Ras-group-related LRR protein 4 OS=Arabidopsis thaliana GN=PIRL4 PE=1 SV=1
trembl
ID A0A067LGW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22422 PE=4 SV=1
Gene Ontology
ID GO:0004721
description plant intracellular ras-group-related lrr protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06150: 401569-404665 , PASA_asmbl_06151: 402081-404665
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_520 0.0 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
2 Hb_000958_150 0.09813442 - - Actin, putative [Ricinus communis]
3 Hb_000152_640 0.1017251585 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
4 Hb_000700_060 0.1071186453 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
5 Hb_002284_170 0.1094424677 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
6 Hb_013749_020 0.113405636 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
7 Hb_056987_010 0.114407776 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
8 Hb_000751_140 0.1155344444 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
9 Hb_001369_770 0.1180626271 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
10 Hb_000175_350 0.1182079744 - - phopholipase d alpha, putative [Ricinus communis]
11 Hb_002092_070 0.1194385938 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
12 Hb_005203_020 0.1214847349 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
13 Hb_000635_200 0.1230633946 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
14 Hb_002942_110 0.1240740548 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
15 Hb_096819_010 0.124890223 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
16 Hb_000197_030 0.1256095348 - - hypothetical protein RCOM_1447500 [Ricinus communis]
17 Hb_002119_090 0.12684893 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
18 Hb_000599_130 0.1271370011 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
19 Hb_000264_080 0.1288589508 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
20 Hb_030736_070 0.128991964 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_520 Hb_000120_520 Hb_000958_150 Hb_000958_150 Hb_000120_520--Hb_000958_150 Hb_000152_640 Hb_000152_640 Hb_000120_520--Hb_000152_640 Hb_000700_060 Hb_000700_060 Hb_000120_520--Hb_000700_060 Hb_002284_170 Hb_002284_170 Hb_000120_520--Hb_002284_170 Hb_013749_020 Hb_013749_020 Hb_000120_520--Hb_013749_020 Hb_056987_010 Hb_056987_010 Hb_000120_520--Hb_056987_010 Hb_000958_150--Hb_002284_170 Hb_000958_150--Hb_056987_010 Hb_102438_030 Hb_102438_030 Hb_000958_150--Hb_102438_030 Hb_030545_030 Hb_030545_030 Hb_000958_150--Hb_030545_030 Hb_002092_070 Hb_002092_070 Hb_000958_150--Hb_002092_070 Hb_096819_010 Hb_096819_010 Hb_000958_150--Hb_096819_010 Hb_005054_310 Hb_005054_310 Hb_000152_640--Hb_005054_310 Hb_000056_300 Hb_000056_300 Hb_000152_640--Hb_000056_300 Hb_005203_020 Hb_005203_020 Hb_000152_640--Hb_005203_020 Hb_167381_020 Hb_167381_020 Hb_000152_640--Hb_167381_020 Hb_000836_370 Hb_000836_370 Hb_000152_640--Hb_000836_370 Hb_002119_090 Hb_002119_090 Hb_000700_060--Hb_002119_090 Hb_004785_030 Hb_004785_030 Hb_000700_060--Hb_004785_030 Hb_006738_050 Hb_006738_050 Hb_000700_060--Hb_006738_050 Hb_000700_060--Hb_002284_170 Hb_004410_070 Hb_004410_070 Hb_000700_060--Hb_004410_070 Hb_000059_020 Hb_000059_020 Hb_000700_060--Hb_000059_020 Hb_002284_170--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_002284_170--Hb_004429_010 Hb_000949_020 Hb_000949_020 Hb_002284_170--Hb_000949_020 Hb_009252_050 Hb_009252_050 Hb_002284_170--Hb_009252_050 Hb_000422_110 Hb_000422_110 Hb_013749_020--Hb_000422_110 Hb_002073_280 Hb_002073_280 Hb_013749_020--Hb_002073_280 Hb_000544_060 Hb_000544_060 Hb_013749_020--Hb_000544_060 Hb_118840_050 Hb_118840_050 Hb_013749_020--Hb_118840_050 Hb_008406_040 Hb_008406_040 Hb_013749_020--Hb_008406_040 Hb_000661_200 Hb_000661_200 Hb_013749_020--Hb_000661_200 Hb_000264_080 Hb_000264_080 Hb_056987_010--Hb_000264_080 Hb_056987_010--Hb_002284_170 Hb_000139_320 Hb_000139_320 Hb_056987_010--Hb_000139_320 Hb_073171_090 Hb_073171_090 Hb_056987_010--Hb_073171_090 Hb_000302_170 Hb_000302_170 Hb_056987_010--Hb_000302_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.0314 21.0399 9.0977 11.3572 10.5077 11.5054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87497 2.284 2.8656 9.70775 3.79787

CAGE analysis