Hb_000120_540

Information

Type -
Description -
Location Contig120: 413809-416139
Sequence    

Annotation

kegg
ID rcu:RCOM_0280610
description translation initiation factor, putative
nr
ID XP_002532478.1
description translation initiation factor, putative [Ricinus communis]
swissprot
ID Q9M060
description Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1
trembl
ID B9T2K9
description Eukaryotic translation initiation factor 6 OS=Ricinus communis GN=EIF6 PE=3 SV=1
Gene Ontology
ID GO:0044424
description eukaryotic translation initiation factor 6-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06153: 413810-416159
cDNA
(Sanger)
(ID:Location)		 001_C12.ab1: 413800-416020 , 013_L19.ab1: 413810-415914 , 022_I15.ab1: 413810-415786 , 029_P18.ab1: 413810-415887

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_540 0.0 - - translation initiation factor, putative [Ricinus communis]
2 Hb_004357_050 0.1118474498 - - PREDICTED: histone deacetylase HDT1-like [Jatropha curcas]
3 Hb_004109_340 0.1180097076 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
4 Hb_111036_010 0.1262337661 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
5 Hb_000392_430 0.129571844 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
6 Hb_011628_060 0.1299578718 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
7 Hb_000302_310 0.1318801284 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
8 Hb_000676_080 0.1338320248 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
9 Hb_172632_100 0.1364931337 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]
10 Hb_005489_060 0.1369105938 - - Anamorsin, putative [Ricinus communis]
11 Hb_002411_080 0.1374610593 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004319_080 0.1382447012 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
13 Hb_002811_180 0.1383282925 - - conserved hypothetical protein [Ricinus communis]
14 Hb_022181_030 0.1390697186 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
15 Hb_000333_110 0.1392640672 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005725_270 0.1393893868 - - PREDICTED: uncharacterized protein LOC105630802 isoform X1 [Jatropha curcas]
17 Hb_163175_010 0.1395637737 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
18 Hb_001599_040 0.1401304461 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
19 Hb_007878_010 0.1401431661 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
20 Hb_002534_120 0.1401795478 - - PREDICTED: protein DCL, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000120_540 Hb_000120_540 Hb_004357_050 Hb_004357_050 Hb_000120_540--Hb_004357_050 Hb_004109_340 Hb_004109_340 Hb_000120_540--Hb_004109_340 Hb_111036_010 Hb_111036_010 Hb_000120_540--Hb_111036_010 Hb_000392_430 Hb_000392_430 Hb_000120_540--Hb_000392_430 Hb_011628_060 Hb_011628_060 Hb_000120_540--Hb_011628_060 Hb_000302_310 Hb_000302_310 Hb_000120_540--Hb_000302_310 Hb_000215_090 Hb_000215_090 Hb_004357_050--Hb_000215_090 Hb_005288_130 Hb_005288_130 Hb_004357_050--Hb_005288_130 Hb_000116_490 Hb_000116_490 Hb_004357_050--Hb_000116_490 Hb_004357_050--Hb_004109_340 Hb_032202_100 Hb_032202_100 Hb_004357_050--Hb_032202_100 Hb_000130_270 Hb_000130_270 Hb_004357_050--Hb_000130_270 Hb_002042_150 Hb_002042_150 Hb_004109_340--Hb_002042_150 Hb_000136_260 Hb_000136_260 Hb_004109_340--Hb_000136_260 Hb_004109_340--Hb_011628_060 Hb_023001_040 Hb_023001_040 Hb_004109_340--Hb_023001_040 Hb_161574_020 Hb_161574_020 Hb_004109_340--Hb_161574_020 Hb_001189_070 Hb_001189_070 Hb_004109_340--Hb_001189_070 Hb_000270_470 Hb_000270_470 Hb_111036_010--Hb_000270_470 Hb_002439_010 Hb_002439_010 Hb_111036_010--Hb_002439_010 Hb_000875_080 Hb_000875_080 Hb_111036_010--Hb_000875_080 Hb_003942_020 Hb_003942_020 Hb_111036_010--Hb_003942_020 Hb_003678_020 Hb_003678_020 Hb_111036_010--Hb_003678_020 Hb_002271_010 Hb_002271_010 Hb_111036_010--Hb_002271_010 Hb_000111_320 Hb_000111_320 Hb_000392_430--Hb_000111_320 Hb_001314_050 Hb_001314_050 Hb_000392_430--Hb_001314_050 Hb_001671_100 Hb_001671_100 Hb_000392_430--Hb_001671_100 Hb_002811_180 Hb_002811_180 Hb_000392_430--Hb_002811_180 Hb_000948_160 Hb_000948_160 Hb_000392_430--Hb_000948_160 Hb_000466_140 Hb_000466_140 Hb_000392_430--Hb_000466_140 Hb_172632_100 Hb_172632_100 Hb_011628_060--Hb_172632_100 Hb_000783_010 Hb_000783_010 Hb_011628_060--Hb_000783_010 Hb_003528_030 Hb_003528_030 Hb_011628_060--Hb_003528_030 Hb_008616_050 Hb_008616_050 Hb_011628_060--Hb_008616_050 Hb_000200_020 Hb_000200_020 Hb_011628_060--Hb_000200_020 Hb_001214_060 Hb_001214_060 Hb_000302_310--Hb_001214_060 Hb_002681_090 Hb_002681_090 Hb_000302_310--Hb_002681_090 Hb_001860_030 Hb_001860_030 Hb_000302_310--Hb_001860_030 Hb_000035_470 Hb_000035_470 Hb_000302_310--Hb_000035_470 Hb_004319_080 Hb_004319_080 Hb_000302_310--Hb_004319_080 Hb_000163_220 Hb_000163_220 Hb_000302_310--Hb_000163_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.18777 5.07335 9.59985 11.8541 5.42145 12.2757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.56406 14.158 2.78044 13.3715 4.63666

CAGE analysis