Hb_000120_550

Information

Type -
Description -
Location Contig120: 417320-420271
Sequence    

Annotation

kegg
ID rcu:RCOM_0280470
description hypothetical protein
nr
ID KDP43789.1
description hypothetical protein JCGZ_22416 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22416 PE=4 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06154: 417337-420290 , PASA_asmbl_06155: 417354-420332
cDNA
(Sanger)
(ID:Location)		 033_E11.ab1: 417337-418075

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_550 0.0 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
2 Hb_032990_010 0.0906731501 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
3 Hb_003897_040 0.0968205661 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
4 Hb_161994_030 0.1016913009 - - unnamed protein product [Vitis vinifera]
5 Hb_000737_030 0.1039364044 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
6 Hb_000579_070 0.1041452265 - - hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
7 Hb_116349_060 0.1050409707 - - PREDICTED: protein WVD2-like 1 isoform X2 [Brassica rapa]
8 Hb_007062_040 0.105202773 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
9 Hb_122548_010 0.1059587028 - - acyl-CoA oxidase, putative [Ricinus communis]
10 Hb_029866_100 0.1073769295 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
11 Hb_000261_230 0.1076920266 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
12 Hb_005460_050 0.1099905456 - - COR413-PM2, putative [Ricinus communis]
13 Hb_000640_070 0.1101772148 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
14 Hb_002837_060 0.1103487424 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
15 Hb_016347_020 0.1118778443 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
16 Hb_188063_050 0.1119791123 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
17 Hb_000236_490 0.1125492375 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
18 Hb_000933_010 0.1131138031 - - -
19 Hb_003038_120 0.1140270489 - - rer1 protein, putative [Ricinus communis]
20 Hb_002983_080 0.1140337401 - - acetylornithine aminotransferase, partial [Prunus persica]

Gene co-expression network

sample Hb_000120_550 Hb_000120_550 Hb_032990_010 Hb_032990_010 Hb_000120_550--Hb_032990_010 Hb_003897_040 Hb_003897_040 Hb_000120_550--Hb_003897_040 Hb_161994_030 Hb_161994_030 Hb_000120_550--Hb_161994_030 Hb_000737_030 Hb_000737_030 Hb_000120_550--Hb_000737_030 Hb_000579_070 Hb_000579_070 Hb_000120_550--Hb_000579_070 Hb_116349_060 Hb_116349_060 Hb_000120_550--Hb_116349_060 Hb_007062_040 Hb_007062_040 Hb_032990_010--Hb_007062_040 Hb_005460_050 Hb_005460_050 Hb_032990_010--Hb_005460_050 Hb_032990_010--Hb_000737_030 Hb_003038_120 Hb_003038_120 Hb_032990_010--Hb_003038_120 Hb_000046_570 Hb_000046_570 Hb_032990_010--Hb_000046_570 Hb_004586_060 Hb_004586_060 Hb_032990_010--Hb_004586_060 Hb_000933_010 Hb_000933_010 Hb_003897_040--Hb_000933_010 Hb_003897_040--Hb_005460_050 Hb_003897_040--Hb_003038_120 Hb_002398_030 Hb_002398_030 Hb_003897_040--Hb_002398_030 Hb_000261_230 Hb_000261_230 Hb_003897_040--Hb_000261_230 Hb_003897_040--Hb_032990_010 Hb_000640_070 Hb_000640_070 Hb_161994_030--Hb_000640_070 Hb_000252_050 Hb_000252_050 Hb_161994_030--Hb_000252_050 Hb_008397_010 Hb_008397_010 Hb_161994_030--Hb_008397_010 Hb_002784_030 Hb_002784_030 Hb_161994_030--Hb_002784_030 Hb_001194_020 Hb_001194_020 Hb_161994_030--Hb_001194_020 Hb_001002_060 Hb_001002_060 Hb_000737_030--Hb_001002_060 Hb_001005_030 Hb_001005_030 Hb_000737_030--Hb_001005_030 Hb_000737_030--Hb_004586_060 Hb_000373_080 Hb_000373_080 Hb_000737_030--Hb_000373_080 Hb_001377_310 Hb_001377_310 Hb_000737_030--Hb_001377_310 Hb_000056_160 Hb_000056_160 Hb_000579_070--Hb_000056_160 Hb_003687_210 Hb_003687_210 Hb_000579_070--Hb_003687_210 Hb_002749_080 Hb_002749_080 Hb_000579_070--Hb_002749_080 Hb_004586_150 Hb_004586_150 Hb_000579_070--Hb_004586_150 Hb_000261_210 Hb_000261_210 Hb_000579_070--Hb_000261_210 Hb_000787_060 Hb_000787_060 Hb_000579_070--Hb_000787_060 Hb_003891_070 Hb_003891_070 Hb_116349_060--Hb_003891_070 Hb_000776_100 Hb_000776_100 Hb_116349_060--Hb_000776_100 Hb_116349_060--Hb_003038_120 Hb_116349_060--Hb_000737_030 Hb_007951_040 Hb_007951_040 Hb_116349_060--Hb_007951_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6464 7.08998 12.7579 17.092 7.92415 12.3475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.45118 5.9567 2.24715 11.9148 6.96324

CAGE analysis