Hb_000120_560

Information

Type -
Description -
Location Contig120: 423515-424126
Sequence    

Annotation

kegg
ID rcu:RCOM_0280460
description protein with unknown function
nr
ID XP_002532473.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LM69
description RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1
trembl
ID B9T2K4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0280460 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_560 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000646_040 0.0740263225 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
3 Hb_000614_120 0.0806344253 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
4 Hb_003023_030 0.0884438893 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
5 Hb_000175_370 0.0896176054 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
6 Hb_000139_390 0.0953515601 - - -
7 Hb_002186_170 0.098039687 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
8 Hb_000098_230 0.1033760259 - - Potassium channel AKT2/3, putative [Ricinus communis]
9 Hb_001953_010 0.1036368138 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
10 Hb_007919_010 0.1051417863 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001417_090 0.1100459891 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
12 Hb_000000_320 0.1101423515 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
13 Hb_001856_130 0.1117926362 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
14 Hb_003582_030 0.1161648808 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
15 Hb_001110_060 0.1170482342 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
16 Hb_004112_070 0.117219434 - - -
17 Hb_005111_020 0.1174009935 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
18 Hb_000422_060 0.1177226159 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
19 Hb_002053_020 0.1180309029 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
20 Hb_002534_070 0.1182070474 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_560 Hb_000120_560 Hb_000646_040 Hb_000646_040 Hb_000120_560--Hb_000646_040 Hb_000614_120 Hb_000614_120 Hb_000120_560--Hb_000614_120 Hb_003023_030 Hb_003023_030 Hb_000120_560--Hb_003023_030 Hb_000175_370 Hb_000175_370 Hb_000120_560--Hb_000175_370 Hb_000139_390 Hb_000139_390 Hb_000120_560--Hb_000139_390 Hb_002186_170 Hb_002186_170 Hb_000120_560--Hb_002186_170 Hb_003582_030 Hb_003582_030 Hb_000646_040--Hb_003582_030 Hb_002534_070 Hb_002534_070 Hb_000646_040--Hb_002534_070 Hb_007919_010 Hb_007919_010 Hb_000646_040--Hb_007919_010 Hb_000646_040--Hb_002186_170 Hb_000422_060 Hb_000422_060 Hb_000646_040--Hb_000422_060 Hb_000614_120--Hb_007919_010 Hb_000098_230 Hb_000098_230 Hb_000614_120--Hb_000098_230 Hb_006351_050 Hb_006351_050 Hb_000614_120--Hb_006351_050 Hb_008021_050 Hb_008021_050 Hb_000614_120--Hb_008021_050 Hb_000497_080 Hb_000497_080 Hb_000614_120--Hb_000497_080 Hb_003023_030--Hb_002534_070 Hb_103225_030 Hb_103225_030 Hb_003023_030--Hb_103225_030 Hb_002960_030 Hb_002960_030 Hb_003023_030--Hb_002960_030 Hb_128216_010 Hb_128216_010 Hb_003023_030--Hb_128216_010 Hb_003023_030--Hb_000646_040 Hb_000175_370--Hb_002186_170 Hb_000175_370--Hb_000139_390 Hb_001500_020 Hb_001500_020 Hb_000175_370--Hb_001500_020 Hb_000175_370--Hb_006351_050 Hb_000172_450 Hb_000172_450 Hb_000175_370--Hb_000172_450 Hb_004112_070 Hb_004112_070 Hb_000139_390--Hb_004112_070 Hb_004474_070 Hb_004474_070 Hb_000139_390--Hb_004474_070 Hb_001953_010 Hb_001953_010 Hb_000139_390--Hb_001953_010 Hb_000684_110 Hb_000684_110 Hb_000139_390--Hb_000684_110 Hb_002186_170--Hb_000098_230 Hb_002186_170--Hb_000422_060 Hb_001541_170 Hb_001541_170 Hb_002186_170--Hb_001541_170 Hb_002186_170--Hb_003582_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.2778 0.980686 5.0302 0 0.0376372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0631373 0.748055

CAGE analysis