Hb_000120_590

Information

Type -
Description -
Location Contig120: 443660-446349
Sequence    

Annotation

kegg
ID pop:POPTR_0007s08580g
description POPTRDRAFT_819930; hypothetical protein
nr
ID XP_011012074.1
description PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HH24
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s08580g PE=4 SV=1
Gene Ontology
ID GO:0009941
description localized to the inner membrane of the chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06158: 443777-446539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_590 0.0 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
2 Hb_008511_110 0.0660160984 - - PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]
3 Hb_001754_010 0.0879253684 - - translationally controlled tumor protein [Hevea brasiliensis]
4 Hb_148209_120 0.0912031464 - - hypothetical protein CISIN_1g032846mg [Citrus sinensis]
5 Hb_005398_030 0.1049608863 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
6 Hb_001629_100 0.1073329332 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
7 Hb_130291_010 0.1081662428 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
8 Hb_001235_070 0.1096859778 - - conserved hypothetical protein [Ricinus communis]
9 Hb_100777_010 0.1111413524 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
10 Hb_000840_190 0.1155733946 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
11 Hb_000333_090 0.1171163899 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
12 Hb_000061_330 0.1173421984 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
13 Hb_011828_020 0.1180419469 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
14 Hb_000024_030 0.1181483226 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
15 Hb_046157_020 0.1202069562 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
16 Hb_000608_420 0.1212412292 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
17 Hb_004116_040 0.1217823938 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
18 Hb_001009_300 0.1234460788 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
19 Hb_000087_020 0.123917095 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
20 Hb_000865_070 0.1246066358 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]

Gene co-expression network

sample Hb_000120_590 Hb_000120_590 Hb_008511_110 Hb_008511_110 Hb_000120_590--Hb_008511_110 Hb_001754_010 Hb_001754_010 Hb_000120_590--Hb_001754_010 Hb_148209_120 Hb_148209_120 Hb_000120_590--Hb_148209_120 Hb_005398_030 Hb_005398_030 Hb_000120_590--Hb_005398_030 Hb_001629_100 Hb_001629_100 Hb_000120_590--Hb_001629_100 Hb_130291_010 Hb_130291_010 Hb_000120_590--Hb_130291_010 Hb_000024_030 Hb_000024_030 Hb_008511_110--Hb_000024_030 Hb_000975_110 Hb_000975_110 Hb_008511_110--Hb_000975_110 Hb_001307_090 Hb_001307_090 Hb_008511_110--Hb_001307_090 Hb_008511_110--Hb_005398_030 Hb_007735_030 Hb_007735_030 Hb_008511_110--Hb_007735_030 Hb_001754_010--Hb_001629_100 Hb_100777_010 Hb_100777_010 Hb_001754_010--Hb_100777_010 Hb_001754_010--Hb_130291_010 Hb_000333_090 Hb_000333_090 Hb_001754_010--Hb_000333_090 Hb_010172_030 Hb_010172_030 Hb_001754_010--Hb_010172_030 Hb_001235_070 Hb_001235_070 Hb_148209_120--Hb_001235_070 Hb_003020_230 Hb_003020_230 Hb_148209_120--Hb_003020_230 Hb_148209_120--Hb_005398_030 Hb_001691_210 Hb_001691_210 Hb_148209_120--Hb_001691_210 Hb_005997_010 Hb_005997_010 Hb_148209_120--Hb_005997_010 Hb_000087_020 Hb_000087_020 Hb_005398_030--Hb_000087_020 Hb_000024_080 Hb_000024_080 Hb_005398_030--Hb_000024_080 Hb_117134_010 Hb_117134_010 Hb_005398_030--Hb_117134_010 Hb_011310_190 Hb_011310_190 Hb_005398_030--Hb_011310_190 Hb_005398_030--Hb_001235_070 Hb_000676_290 Hb_000676_290 Hb_005398_030--Hb_000676_290 Hb_001008_010 Hb_001008_010 Hb_001629_100--Hb_001008_010 Hb_001629_100--Hb_130291_010 Hb_098315_120 Hb_098315_120 Hb_001629_100--Hb_098315_120 Hb_001629_100--Hb_100777_010 Hb_000184_050 Hb_000184_050 Hb_130291_010--Hb_000184_050 Hb_012265_010 Hb_012265_010 Hb_130291_010--Hb_012265_010 Hb_001433_050 Hb_001433_050 Hb_130291_010--Hb_001433_050 Hb_130291_010--Hb_000024_030 Hb_000199_070 Hb_000199_070 Hb_130291_010--Hb_000199_070 Hb_130291_010--Hb_000975_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.7682 10.0662 5.24203 22.5216 25.3241 70.4212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.447 71.508 43.0346 43.279 9.87081

CAGE analysis