Hb_000120_600

Information

Type -
Description -
Location Contig120: 464945-467967
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10230g
description POPTRDRAFT_760338; auxin efflux carrier family protein
nr
ID XP_012065419.1
description PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
swissprot
ID P38355
description Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR287W PE=1 SV=1
trembl
ID A0A067LGV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22412 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized transporter ybr287w-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06159: 462843-464929 , PASA_asmbl_06160: 464957-468141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_600 0.0 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
2 Hb_001856_130 0.0723653999 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
3 Hb_002804_070 0.0780094117 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
4 Hb_001953_010 0.0853510251 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
5 Hb_017549_010 0.095386611 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
6 Hb_004374_170 0.1036271757 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
7 Hb_004474_070 0.1090108723 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
8 Hb_002303_050 0.1136671669 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
9 Hb_029576_070 0.1162071185 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
10 Hb_000714_070 0.1166432063 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
11 Hb_001675_350 0.1172565958 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
12 Hb_000000_320 0.1177787842 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
13 Hb_002597_030 0.1186196904 - - -
14 Hb_153180_010 0.1198352115 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
15 Hb_001417_090 0.1219050951 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
16 Hb_000120_560 0.1226819561 - - protein with unknown function [Ricinus communis]
17 Hb_004157_060 0.1234027758 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Jatropha curcas]
18 Hb_128216_010 0.123587469 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
19 Hb_008352_020 0.1241524521 - - hypothetical protein [Cecembia lonarensis]
20 Hb_000646_040 0.1276440073 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]

Gene co-expression network

sample Hb_000120_600 Hb_000120_600 Hb_001856_130 Hb_001856_130 Hb_000120_600--Hb_001856_130 Hb_002804_070 Hb_002804_070 Hb_000120_600--Hb_002804_070 Hb_001953_010 Hb_001953_010 Hb_000120_600--Hb_001953_010 Hb_017549_010 Hb_017549_010 Hb_000120_600--Hb_017549_010 Hb_004374_170 Hb_004374_170 Hb_000120_600--Hb_004374_170 Hb_004474_070 Hb_004474_070 Hb_000120_600--Hb_004474_070 Hb_153180_010 Hb_153180_010 Hb_001856_130--Hb_153180_010 Hb_001417_090 Hb_001417_090 Hb_001856_130--Hb_001417_090 Hb_120040_010 Hb_120040_010 Hb_001856_130--Hb_120040_010 Hb_001856_130--Hb_001953_010 Hb_000000_320 Hb_000000_320 Hb_001856_130--Hb_000000_320 Hb_002804_070--Hb_001953_010 Hb_002804_070--Hb_004374_170 Hb_005946_200 Hb_005946_200 Hb_002804_070--Hb_005946_200 Hb_002303_050 Hb_002303_050 Hb_002804_070--Hb_002303_050 Hb_002804_070--Hb_004474_070 Hb_001953_010--Hb_004474_070 Hb_001953_010--Hb_000000_320 Hb_001953_010--Hb_002303_050 Hb_001022_070 Hb_001022_070 Hb_001953_010--Hb_001022_070 Hb_128216_010 Hb_128216_010 Hb_001953_010--Hb_128216_010 Hb_001115_100 Hb_001115_100 Hb_017549_010--Hb_001115_100 Hb_002597_030 Hb_002597_030 Hb_017549_010--Hb_002597_030 Hb_017549_010--Hb_004374_170 Hb_017549_010--Hb_002804_070 Hb_029576_070 Hb_029576_070 Hb_017549_010--Hb_029576_070 Hb_006951_010 Hb_006951_010 Hb_004374_170--Hb_006951_010 Hb_004374_170--Hb_001953_010 Hb_004374_170--Hb_005946_200 Hb_004474_070--Hb_002303_050 Hb_004474_070--Hb_128216_010 Hb_001675_350 Hb_001675_350 Hb_004474_070--Hb_001675_350 Hb_000139_390 Hb_000139_390 Hb_004474_070--Hb_000139_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100669 21.9978 13.9853 52.7418 0.119938 0.117891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.135749 0.0426198 1.41652 4.93676

CAGE analysis