Hb_000120_640

Information

Type -
Description -
Location Contig120: 510803-516465
Sequence    

Annotation

kegg
ID rcu:RCOM_0874940
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002521729.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q84VG6
description Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2
trembl
ID B9S6W0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0874940 PE=4 SV=1
Gene Ontology
ID GO:0051536
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06174: 511309-513671 , PASA_asmbl_06177: 516138-516240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_640 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001357_200 0.0820005381 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
3 Hb_001014_060 0.0864946178 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
4 Hb_003913_130 0.0894813239 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
5 Hb_000025_350 0.0917936019 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
6 Hb_007533_040 0.0977519862 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_007810_010 0.1002669124 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
8 Hb_004429_020 0.1029493457 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
9 Hb_004218_020 0.1056286449 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001014_070 0.1057087087 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
11 Hb_171215_010 0.1125630208 - - vesicle-associated membrane protein, putative [Ricinus communis]
12 Hb_000638_130 0.1127124405 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
13 Hb_001486_250 0.1152338812 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
14 Hb_032202_040 0.1165053425 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
15 Hb_000035_350 0.1165166783 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
16 Hb_000008_440 0.1167087385 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
17 Hb_001226_140 0.1176604119 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
18 Hb_000086_630 0.1206769542 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
19 Hb_006740_030 0.1216826609 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
20 Hb_000304_080 0.1220104811 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_640 Hb_000120_640 Hb_001357_200 Hb_001357_200 Hb_000120_640--Hb_001357_200 Hb_001014_060 Hb_001014_060 Hb_000120_640--Hb_001014_060 Hb_003913_130 Hb_003913_130 Hb_000120_640--Hb_003913_130 Hb_000025_350 Hb_000025_350 Hb_000120_640--Hb_000025_350 Hb_007533_040 Hb_007533_040 Hb_000120_640--Hb_007533_040 Hb_007810_010 Hb_007810_010 Hb_000120_640--Hb_007810_010 Hb_001357_200--Hb_000025_350 Hb_001357_200--Hb_001014_060 Hb_001357_200--Hb_003913_130 Hb_001014_070 Hb_001014_070 Hb_001357_200--Hb_001014_070 Hb_000304_080 Hb_000304_080 Hb_001357_200--Hb_000304_080 Hb_001357_200--Hb_007533_040 Hb_001014_060--Hb_000025_350 Hb_001014_060--Hb_001014_070 Hb_000638_130 Hb_000638_130 Hb_001014_060--Hb_000638_130 Hb_001014_060--Hb_003913_130 Hb_003913_130--Hb_000025_350 Hb_003913_130--Hb_007533_040 Hb_003913_130--Hb_000638_130 Hb_000140_090 Hb_000140_090 Hb_003913_130--Hb_000140_090 Hb_000025_350--Hb_001014_070 Hb_000025_350--Hb_000304_080 Hb_002042_050 Hb_002042_050 Hb_000025_350--Hb_002042_050 Hb_004583_010 Hb_004583_010 Hb_007533_040--Hb_004583_010 Hb_007533_040--Hb_000140_090 Hb_006740_030 Hb_006740_030 Hb_007533_040--Hb_006740_030 Hb_005601_040 Hb_005601_040 Hb_007533_040--Hb_005601_040 Hb_002043_030 Hb_002043_030 Hb_007810_010--Hb_002043_030 Hb_004218_020 Hb_004218_020 Hb_007810_010--Hb_004218_020 Hb_000008_440 Hb_000008_440 Hb_007810_010--Hb_000008_440 Hb_003657_010 Hb_003657_010 Hb_007810_010--Hb_003657_010 Hb_001541_070 Hb_001541_070 Hb_007810_010--Hb_001541_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19303 2.40741 4.11019 3.02509 0.659467 1.1541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.00551 1.93405 4.53425 2.03128 4.23848

CAGE analysis