Hb_000120_670

Information

Type -
Description -
Location Contig120: 532834-536849
Sequence    

Annotation

kegg
ID rcu:RCOM_0874710
description srpk, putative (EC:2.7.12.1)
nr
ID XP_012065407.1
description PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
swissprot
ID Q45FA5
description Serine/threonine-protein kinase SRPK OS=Physarum polycephalum PE=1 SV=1
trembl
ID A0A067LHV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22401 PE=3 SV=1
Gene Ontology
ID GO:0004674
description srsf protein kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06184: 533009-534903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_670 0.0 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
2 Hb_003750_050 0.0517376384 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
3 Hb_000580_180 0.0552058753 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003964_070 0.0582954082 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
5 Hb_000019_030 0.0584420715 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
6 Hb_001279_150 0.0592065615 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
7 Hb_000345_240 0.0602220988 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
8 Hb_019280_040 0.0606786557 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000603_150 0.0626868379 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
10 Hb_005144_160 0.0628545174 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
11 Hb_000318_290 0.0653876445 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
12 Hb_011037_030 0.0654866867 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
13 Hb_007317_110 0.0655946838 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
14 Hb_000215_110 0.0662520093 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
15 Hb_000205_300 0.0665838116 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
16 Hb_001635_090 0.0674535006 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
17 Hb_003525_010 0.0685498743 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
18 Hb_006634_070 0.0685811454 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
19 Hb_000085_160 0.0697665728 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
20 Hb_000011_200 0.0698338218 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_670 Hb_000120_670 Hb_003750_050 Hb_003750_050 Hb_000120_670--Hb_003750_050 Hb_000580_180 Hb_000580_180 Hb_000120_670--Hb_000580_180 Hb_003964_070 Hb_003964_070 Hb_000120_670--Hb_003964_070 Hb_000019_030 Hb_000019_030 Hb_000120_670--Hb_000019_030 Hb_001279_150 Hb_001279_150 Hb_000120_670--Hb_001279_150 Hb_000345_240 Hb_000345_240 Hb_000120_670--Hb_000345_240 Hb_000156_010 Hb_000156_010 Hb_003750_050--Hb_000156_010 Hb_003750_050--Hb_001279_150 Hb_002811_180 Hb_002811_180 Hb_003750_050--Hb_002811_180 Hb_011037_030 Hb_011037_030 Hb_003750_050--Hb_011037_030 Hb_054865_150 Hb_054865_150 Hb_003750_050--Hb_054865_150 Hb_005144_160 Hb_005144_160 Hb_000580_180--Hb_005144_160 Hb_011344_210 Hb_011344_210 Hb_000580_180--Hb_011344_210 Hb_001142_030 Hb_001142_030 Hb_000580_180--Hb_001142_030 Hb_002863_050 Hb_002863_050 Hb_000580_180--Hb_002863_050 Hb_007691_030 Hb_007691_030 Hb_000580_180--Hb_007691_030 Hb_003665_060 Hb_003665_060 Hb_003964_070--Hb_003665_060 Hb_007317_110 Hb_007317_110 Hb_003964_070--Hb_007317_110 Hb_001357_350 Hb_001357_350 Hb_003964_070--Hb_001357_350 Hb_003964_070--Hb_000345_240 Hb_010381_090 Hb_010381_090 Hb_003964_070--Hb_010381_090 Hb_005357_080 Hb_005357_080 Hb_000019_030--Hb_005357_080 Hb_001575_090 Hb_001575_090 Hb_000019_030--Hb_001575_090 Hb_011671_240 Hb_011671_240 Hb_000019_030--Hb_011671_240 Hb_000468_060 Hb_000468_060 Hb_000019_030--Hb_000468_060 Hb_000618_040 Hb_000618_040 Hb_000019_030--Hb_000618_040 Hb_000215_110 Hb_000215_110 Hb_001279_150--Hb_000215_110 Hb_005489_060 Hb_005489_060 Hb_001279_150--Hb_005489_060 Hb_007017_030 Hb_007017_030 Hb_001279_150--Hb_007017_030 Hb_002182_080 Hb_002182_080 Hb_001279_150--Hb_002182_080 Hb_000260_330 Hb_000260_330 Hb_000345_240--Hb_000260_330 Hb_000345_240--Hb_003750_050 Hb_000617_180 Hb_000617_180 Hb_000345_240--Hb_000617_180 Hb_004414_060 Hb_004414_060 Hb_000345_240--Hb_004414_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8251 8.23395 8.83216 13.8117 13.3386 16.7544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8295 14.4689 13.3975 13.2264 7.25856

CAGE analysis