Hb_000120_740

Information

Type desease resistance
Description Gene Name: VARLMGL
Location Contig120: 578952-587025
Sequence    

Annotation

kegg
ID rcu:RCOM_0874470
description hypothetical protein
nr
ID XP_002521722.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FKN7
description Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=2 SV=2
trembl
ID B9S6V3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0874470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06195: 579022-579979 , PASA_asmbl_06196: 580168-580517 , PASA_asmbl_06197: 581890-584857 , PASA_asmbl_06198: 585940-587453
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_740 0.0 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
2 Hb_036388_010 0.109430247 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
3 Hb_004326_010 0.1099495019 - - cationic amino acid transporter, putative [Ricinus communis]
4 Hb_001105_130 0.1119858248 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
5 Hb_035834_010 0.1120235556 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000590_070 0.1142129561 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
7 Hb_009193_010 0.116378997 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
8 Hb_011310_050 0.1222655974 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
9 Hb_000445_370 0.1225536457 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
10 Hb_189003_070 0.1228949239 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
11 Hb_000167_040 0.1240434461 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
12 Hb_000283_140 0.1258050553 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
13 Hb_006736_050 0.127702108 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
14 Hb_001894_010 0.1295664616 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
15 Hb_030312_030 0.1301836783 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
16 Hb_007317_020 0.1310466276 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
17 Hb_011174_080 0.1315642144 - - PREDICTED: sulfite oxidase [Jatropha curcas]
18 Hb_003783_050 0.1316258454 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002805_090 0.1333142229 - - Ran GTPase binding protein, putative [Ricinus communis]
20 Hb_000157_140 0.1338713229 - - cinnamoyl-CoA reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000120_740 Hb_000120_740 Hb_036388_010 Hb_036388_010 Hb_000120_740--Hb_036388_010 Hb_004326_010 Hb_004326_010 Hb_000120_740--Hb_004326_010 Hb_001105_130 Hb_001105_130 Hb_000120_740--Hb_001105_130 Hb_035834_010 Hb_035834_010 Hb_000120_740--Hb_035834_010 Hb_000590_070 Hb_000590_070 Hb_000120_740--Hb_000590_070 Hb_009193_010 Hb_009193_010 Hb_000120_740--Hb_009193_010 Hb_000768_150 Hb_000768_150 Hb_036388_010--Hb_000768_150 Hb_036388_010--Hb_035834_010 Hb_003783_050 Hb_003783_050 Hb_036388_010--Hb_003783_050 Hb_000997_320 Hb_000997_320 Hb_036388_010--Hb_000997_320 Hb_006736_050 Hb_006736_050 Hb_036388_010--Hb_006736_050 Hb_000417_380 Hb_000417_380 Hb_036388_010--Hb_000417_380 Hb_007537_030 Hb_007537_030 Hb_004326_010--Hb_007537_030 Hb_000570_020 Hb_000570_020 Hb_004326_010--Hb_000570_020 Hb_000157_140 Hb_000157_140 Hb_004326_010--Hb_000157_140 Hb_000181_460 Hb_000181_460 Hb_004326_010--Hb_000181_460 Hb_004326_010--Hb_001105_130 Hb_002805_090 Hb_002805_090 Hb_001105_130--Hb_002805_090 Hb_011310_050 Hb_011310_050 Hb_001105_130--Hb_011310_050 Hb_000679_040 Hb_000679_040 Hb_001105_130--Hb_000679_040 Hb_010381_020 Hb_010381_020 Hb_001105_130--Hb_010381_020 Hb_000445_370 Hb_000445_370 Hb_035834_010--Hb_000445_370 Hb_035834_010--Hb_003783_050 Hb_000441_050 Hb_000441_050 Hb_035834_010--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_035834_010--Hb_004242_170 Hb_005181_060 Hb_005181_060 Hb_000590_070--Hb_005181_060 Hb_000116_240 Hb_000116_240 Hb_000590_070--Hb_000116_240 Hb_007317_020 Hb_007317_020 Hb_000590_070--Hb_007317_020 Hb_000309_030 Hb_000309_030 Hb_000590_070--Hb_000309_030 Hb_005485_070 Hb_005485_070 Hb_000590_070--Hb_005485_070 Hb_000066_040 Hb_000066_040 Hb_009193_010--Hb_000066_040 Hb_001821_060 Hb_001821_060 Hb_009193_010--Hb_001821_060 Hb_000256_160 Hb_000256_160 Hb_009193_010--Hb_000256_160 Hb_000510_190 Hb_000510_190 Hb_009193_010--Hb_000510_190 Hb_000414_080 Hb_000414_080 Hb_009193_010--Hb_000414_080 Hb_000997_290 Hb_000997_290 Hb_009193_010--Hb_000997_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.425378 1.6822 3.51171 5.11433 0.33607 0.87231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.35821 0.208807 0.699948 3.18701 4.77399

CAGE analysis