Hb_000120_800

Information

Type -
Description -
Location Contig120: 641051-647444
Sequence    

Annotation

kegg
ID pop:POPTR_0005s02860g
description hypothetical protein
nr
ID XP_012065451.1
description PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
swissprot
ID Q9V8W3
description Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1
trembl
ID A0A067LGU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22392 PE=4 SV=1
Gene Ontology
ID GO:0005968
description rab proteins geranylgeranyltransferase component a 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06208: 641373-646998 , PASA_asmbl_06209: 641373-647301 , PASA_asmbl_06210: 645710-645956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_800 0.0 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
2 Hb_001840_080 0.0687258674 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
3 Hb_005306_110 0.0723493121 - - casein kinase, putative [Ricinus communis]
4 Hb_001017_040 0.0737269071 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
5 Hb_000134_090 0.0765947843 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
6 Hb_000009_170 0.0771108266 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
7 Hb_022137_060 0.0771420267 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
8 Hb_000190_140 0.0775198092 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
9 Hb_001047_020 0.0804502481 - - -
10 Hb_001001_060 0.0816399057 - - -
11 Hb_028639_060 0.0824077394 - - transporter, putative [Ricinus communis]
12 Hb_000481_040 0.0830273213 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
13 Hb_000370_030 0.0843408296 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
14 Hb_012760_170 0.0852428376 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
15 Hb_001862_190 0.085423873 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
16 Hb_001295_020 0.0864411753 - - Uncharacterized protein TCM_027312 [Theobroma cacao]
17 Hb_004310_060 0.0873664995 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_000184_130 0.0874423304 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
19 Hb_000359_170 0.0879389446 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
20 Hb_000120_500 0.0893152033 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_000120_800 Hb_000120_800 Hb_001840_080 Hb_001840_080 Hb_000120_800--Hb_001840_080 Hb_005306_110 Hb_005306_110 Hb_000120_800--Hb_005306_110 Hb_001017_040 Hb_001017_040 Hb_000120_800--Hb_001017_040 Hb_000134_090 Hb_000134_090 Hb_000120_800--Hb_000134_090 Hb_000009_170 Hb_000009_170 Hb_000120_800--Hb_000009_170 Hb_022137_060 Hb_022137_060 Hb_000120_800--Hb_022137_060 Hb_001047_020 Hb_001047_020 Hb_001840_080--Hb_001047_020 Hb_002215_050 Hb_002215_050 Hb_001840_080--Hb_002215_050 Hb_003638_140 Hb_003638_140 Hb_001840_080--Hb_003638_140 Hb_000749_150 Hb_000749_150 Hb_001840_080--Hb_000749_150 Hb_001840_080--Hb_005306_110 Hb_033153_050 Hb_033153_050 Hb_005306_110--Hb_033153_050 Hb_001584_330 Hb_001584_330 Hb_005306_110--Hb_001584_330 Hb_001623_420 Hb_001623_420 Hb_005306_110--Hb_001623_420 Hb_000943_070 Hb_000943_070 Hb_005306_110--Hb_000943_070 Hb_000120_950 Hb_000120_950 Hb_005306_110--Hb_000120_950 Hb_003642_060 Hb_003642_060 Hb_005306_110--Hb_003642_060 Hb_000184_110 Hb_000184_110 Hb_001017_040--Hb_000184_110 Hb_005662_030 Hb_005662_030 Hb_001017_040--Hb_005662_030 Hb_000179_020 Hb_000179_020 Hb_001017_040--Hb_000179_020 Hb_005396_130 Hb_005396_130 Hb_001017_040--Hb_005396_130 Hb_002039_010 Hb_002039_010 Hb_001017_040--Hb_002039_010 Hb_002030_030 Hb_002030_030 Hb_000134_090--Hb_002030_030 Hb_001862_190 Hb_001862_190 Hb_000134_090--Hb_001862_190 Hb_004096_030 Hb_004096_030 Hb_000134_090--Hb_004096_030 Hb_004934_090 Hb_004934_090 Hb_000134_090--Hb_004934_090 Hb_006922_100 Hb_006922_100 Hb_000134_090--Hb_006922_100 Hb_004724_200 Hb_004724_200 Hb_000134_090--Hb_004724_200 Hb_001001_060 Hb_001001_060 Hb_000009_170--Hb_001001_060 Hb_000620_010 Hb_000620_010 Hb_000009_170--Hb_000620_010 Hb_009838_100 Hb_009838_100 Hb_000009_170--Hb_009838_100 Hb_000009_170--Hb_022137_060 Hb_000331_210 Hb_000331_210 Hb_000009_170--Hb_000331_210 Hb_006663_100 Hb_006663_100 Hb_022137_060--Hb_006663_100 Hb_010120_030 Hb_010120_030 Hb_022137_060--Hb_010120_030 Hb_000359_170 Hb_000359_170 Hb_022137_060--Hb_000359_170 Hb_012760_170 Hb_012760_170 Hb_022137_060--Hb_012760_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.9499 12.2803 8.62929 9.64835 27.4536 43.6838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.7567 15.1132 30.956 13.8829 7.19121

CAGE analysis