Hb_000120_860

Information

Type -
Description -
Location Contig120: 667934-678555
Sequence    

Annotation

kegg
ID rcu:RCOM_1698140
description nucellin, putative
nr
ID XP_002522918.1
description nucellin, putative [Ricinus communis]
swissprot
ID Q0IU52
description Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1
trembl
ID B9SA99
description Nucellin, putative OS=Ricinus communis GN=RCOM_1698140 PE=4 SV=1
Gene Ontology
ID GO:0005576
description aspartic proteinase asp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_860 0.0 - - nucellin, putative [Ricinus communis]
2 Hb_000270_660 0.0709005891 - - purine permease, putative [Ricinus communis]
3 Hb_001009_260 0.0716910466 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
4 Hb_000000_310 0.0801553845 - - metalloendopeptidase, putative [Ricinus communis]
5 Hb_030959_010 0.084393085 - - cullin, putative [Ricinus communis]
6 Hb_005116_140 0.0884392492 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
7 Hb_003682_070 0.0900152 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
8 Hb_004735_020 0.0900264986 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
9 Hb_130589_010 0.0909478593 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_002150_020 0.0931885149 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_009674_050 0.09667464 - - Endosomal P24A protein precursor, putative [Ricinus communis]
12 Hb_000025_500 0.099119763 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_009252_010 0.1001947768 - - PREDICTED: kinesin light chain [Jatropha curcas]
14 Hb_000762_110 0.1014891287 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
15 Hb_005571_010 0.1028752992 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
16 Hb_000684_390 0.1029687112 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
17 Hb_005914_040 0.1068274547 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
18 Hb_003746_010 0.1089006663 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000107_250 0.1093471695 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
20 Hb_001421_090 0.1105670083 - - hypothetical protein RCOM_1278080 [Ricinus communis]

Gene co-expression network

sample Hb_000120_860 Hb_000120_860 Hb_000270_660 Hb_000270_660 Hb_000120_860--Hb_000270_660 Hb_001009_260 Hb_001009_260 Hb_000120_860--Hb_001009_260 Hb_000000_310 Hb_000000_310 Hb_000120_860--Hb_000000_310 Hb_030959_010 Hb_030959_010 Hb_000120_860--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_000120_860--Hb_005116_140 Hb_003682_070 Hb_003682_070 Hb_000120_860--Hb_003682_070 Hb_000270_660--Hb_000000_310 Hb_000270_660--Hb_001009_260 Hb_009674_050 Hb_009674_050 Hb_000270_660--Hb_009674_050 Hb_002164_020 Hb_002164_020 Hb_000270_660--Hb_002164_020 Hb_000270_660--Hb_005116_140 Hb_130589_010 Hb_130589_010 Hb_001009_260--Hb_130589_010 Hb_002150_020 Hb_002150_020 Hb_001009_260--Hb_002150_020 Hb_005571_010 Hb_005571_010 Hb_001009_260--Hb_005571_010 Hb_004735_020 Hb_004735_020 Hb_001009_260--Hb_004735_020 Hb_000579_040 Hb_000579_040 Hb_001009_260--Hb_000579_040 Hb_000000_310--Hb_003682_070 Hb_000107_250 Hb_000107_250 Hb_000000_310--Hb_000107_250 Hb_000300_510 Hb_000300_510 Hb_000000_310--Hb_000300_510 Hb_000684_390 Hb_000684_390 Hb_000000_310--Hb_000684_390 Hb_000922_060 Hb_000922_060 Hb_000000_310--Hb_000922_060 Hb_030959_010--Hb_005116_140 Hb_009252_010 Hb_009252_010 Hb_030959_010--Hb_009252_010 Hb_030959_010--Hb_009674_050 Hb_000417_170 Hb_000417_170 Hb_030959_010--Hb_000417_170 Hb_002611_010 Hb_002611_010 Hb_030959_010--Hb_002611_010 Hb_002805_090 Hb_002805_090 Hb_005116_140--Hb_002805_090 Hb_005116_140--Hb_009674_050 Hb_002311_130 Hb_002311_130 Hb_005116_140--Hb_002311_130 Hb_000025_500 Hb_000025_500 Hb_005116_140--Hb_000025_500 Hb_003682_070--Hb_000922_060 Hb_003682_070--Hb_000300_510 Hb_003682_070--Hb_000107_250 Hb_003682_070--Hb_004735_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.690462 1.48262 1.78371 3.37858 0.905647 0.809714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.851696 0.511073 0.902005 1.33958 5.31147

CAGE analysis