Hb_000120_890

Information

Type -
Description -
Location Contig120: 680961-690036
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10350g
description POPTRDRAFT_558773; phosphoinositide phosphatase family protein
nr
ID XP_012065379.1
description PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
swissprot
ID Q7X911
description Phosphoinositide phosphatase SAC6 OS=Arabidopsis thaliana GN=SAC6 PE=2 SV=1
trembl
ID A0A067L979
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22385 PE=4 SV=1
Gene Ontology
ID GO:0004439
description phosphoinositide phosphatase sac6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06218: 681086-681443 , PASA_asmbl_06219: 682049-682383 , PASA_asmbl_06221: 685014-687032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_890 0.0 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
2 Hb_003498_100 0.0474396837 - - component of oligomeric golgi complex, putative [Ricinus communis]
3 Hb_000476_060 0.0694414077 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
4 Hb_001504_010 0.0696122782 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
5 Hb_178968_060 0.0701998019 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
6 Hb_008304_020 0.0705009767 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
7 Hb_018790_020 0.0735662394 - - protein kinase, putative [Ricinus communis]
8 Hb_007483_070 0.0737389322 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
9 Hb_001279_190 0.0742804271 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
10 Hb_001703_040 0.0747132675 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
11 Hb_001635_110 0.0759572728 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
12 Hb_089839_010 0.0773587083 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
13 Hb_000579_080 0.0777129451 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
14 Hb_000163_260 0.0778157798 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
15 Hb_001799_160 0.0781377866 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_012633_050 0.0825375215 - - zinc finger protein, putative [Ricinus communis]
17 Hb_006438_020 0.084123415 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
18 Hb_003687_120 0.0841311102 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
19 Hb_005977_030 0.0858146748 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
20 Hb_011716_010 0.0859633564 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_890 Hb_000120_890 Hb_003498_100 Hb_003498_100 Hb_000120_890--Hb_003498_100 Hb_000476_060 Hb_000476_060 Hb_000120_890--Hb_000476_060 Hb_001504_010 Hb_001504_010 Hb_000120_890--Hb_001504_010 Hb_178968_060 Hb_178968_060 Hb_000120_890--Hb_178968_060 Hb_008304_020 Hb_008304_020 Hb_000120_890--Hb_008304_020 Hb_018790_020 Hb_018790_020 Hb_000120_890--Hb_018790_020 Hb_003498_100--Hb_178968_060 Hb_089839_010 Hb_089839_010 Hb_003498_100--Hb_089839_010 Hb_001279_190 Hb_001279_190 Hb_003498_100--Hb_001279_190 Hb_000703_190 Hb_000703_190 Hb_003498_100--Hb_000703_190 Hb_001799_160 Hb_001799_160 Hb_003498_100--Hb_001799_160 Hb_003098_070 Hb_003098_070 Hb_000476_060--Hb_003098_070 Hb_000476_060--Hb_089839_010 Hb_001635_110 Hb_001635_110 Hb_000476_060--Hb_001635_110 Hb_000788_030 Hb_000788_030 Hb_000476_060--Hb_000788_030 Hb_004324_360 Hb_004324_360 Hb_000476_060--Hb_004324_360 Hb_007483_070 Hb_007483_070 Hb_001504_010--Hb_007483_070 Hb_021596_020 Hb_021596_020 Hb_001504_010--Hb_021596_020 Hb_000163_260 Hb_000163_260 Hb_001504_010--Hb_000163_260 Hb_000579_080 Hb_000579_080 Hb_001504_010--Hb_000579_080 Hb_001504_010--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_001504_010--Hb_000815_300 Hb_178968_060--Hb_001635_110 Hb_000230_460 Hb_000230_460 Hb_178968_060--Hb_000230_460 Hb_001300_280 Hb_001300_280 Hb_178968_060--Hb_001300_280 Hb_001221_440 Hb_001221_440 Hb_178968_060--Hb_001221_440 Hb_008304_020--Hb_001635_110 Hb_006189_020 Hb_006189_020 Hb_008304_020--Hb_006189_020 Hb_008304_020--Hb_003098_070 Hb_008304_020--Hb_007483_070 Hb_159809_070 Hb_159809_070 Hb_008304_020--Hb_159809_070 Hb_001025_120 Hb_001025_120 Hb_018790_020--Hb_001025_120 Hb_007894_150 Hb_007894_150 Hb_018790_020--Hb_007894_150 Hb_000028_520 Hb_000028_520 Hb_018790_020--Hb_000028_520 Hb_002716_060 Hb_002716_060 Hb_018790_020--Hb_002716_060 Hb_000365_230 Hb_000365_230 Hb_018790_020--Hb_000365_230 Hb_004109_320 Hb_004109_320 Hb_018790_020--Hb_004109_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.73306 5.67749 12.9424 7.64 3.99553 2.86029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.46931 5.14441 4.29009 6.34048 6.30033

CAGE analysis