Hb_000120_900

Information

Type -
Description -
Location Contig120: 691199-695268
Sequence    

Annotation

kegg
ID rcu:RCOM_0873840
description catalase, putative (EC:1.11.1.6)
nr
ID ADU56199.1
description catalase [Hevea brasiliensis]
swissprot
ID P30567
description Catalase isozyme 2 OS=Gossypium hirsutum GN=CAT2 PE=2 SV=1
trembl
ID E9NM58
description Catalase OS=Hevea brasiliensis GN=cat PE=2 SV=1
Gene Ontology
ID GO:0005777
description catalase isozyme 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06222: 691152-695075
cDNA
(Sanger)
(ID:Location)		 039_J06.ab1: 692977-693752 , 052_P06.ab1: 693017-693752

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_900 0.0 - - catalase [Hevea brasiliensis]
2 Hb_000699_080 0.1429869651 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
3 Hb_006925_030 0.1520713431 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
4 Hb_000667_140 0.1620207548 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
5 Hb_002686_060 0.1679070029 - - conserved hypothetical protein [Ricinus communis]
6 Hb_159305_010 0.1731154618 - - rpl2 [Jatropha curcas]
7 Hb_000038_020 0.1740761595 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
8 Hb_005588_110 0.1823885045 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
9 Hb_001484_080 0.1833677749 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
10 Hb_000069_370 0.1834929534 - - -
11 Hb_003106_170 0.1838244631 - - Endonuclease III, putative [Ricinus communis]
12 Hb_004987_030 0.1866267725 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
13 Hb_003427_080 0.1884019202 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
14 Hb_000012_440 0.1887337108 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
15 Hb_000012_010 0.1894979908 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
16 Hb_007044_250 0.1912727935 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000977_270 0.1976277508 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
18 Hb_073490_010 0.1979702606 - - NAD(P)-linked oxidoreductase superfamily protein isoform 1 [Theobroma cacao]
19 Hb_003336_020 0.1983311099 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
20 Hb_000062_520 0.1995481792 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000120_900 Hb_000120_900 Hb_000699_080 Hb_000699_080 Hb_000120_900--Hb_000699_080 Hb_006925_030 Hb_006925_030 Hb_000120_900--Hb_006925_030 Hb_000667_140 Hb_000667_140 Hb_000120_900--Hb_000667_140 Hb_002686_060 Hb_002686_060 Hb_000120_900--Hb_002686_060 Hb_159305_010 Hb_159305_010 Hb_000120_900--Hb_159305_010 Hb_000038_020 Hb_000038_020 Hb_000120_900--Hb_000038_020 Hb_000699_080--Hb_002686_060 Hb_000699_080--Hb_006925_030 Hb_003336_020 Hb_003336_020 Hb_000699_080--Hb_003336_020 Hb_000699_080--Hb_000038_020 Hb_168031_020 Hb_168031_020 Hb_000699_080--Hb_168031_020 Hb_000359_070 Hb_000359_070 Hb_006925_030--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_006925_030--Hb_000360_010 Hb_011900_020 Hb_011900_020 Hb_006925_030--Hb_011900_020 Hb_006925_030--Hb_002686_060 Hb_073490_010 Hb_073490_010 Hb_006925_030--Hb_073490_010 Hb_000667_140--Hb_000038_020 Hb_002304_180 Hb_002304_180 Hb_000667_140--Hb_002304_180 Hb_003427_080 Hb_003427_080 Hb_000667_140--Hb_003427_080 Hb_003494_030 Hb_003494_030 Hb_000667_140--Hb_003494_030 Hb_001266_160 Hb_001266_160 Hb_000667_140--Hb_001266_160 Hb_000667_140--Hb_000359_070 Hb_002686_060--Hb_000038_020 Hb_002686_060--Hb_003336_020 Hb_000012_010 Hb_000012_010 Hb_002686_060--Hb_000012_010 Hb_002686_060--Hb_000359_070 Hb_002686_060--Hb_168031_020 Hb_159305_010--Hb_073490_010 Hb_051924_010 Hb_051924_010 Hb_159305_010--Hb_051924_010 Hb_019253_040 Hb_019253_040 Hb_159305_010--Hb_019253_040 Hb_159305_010--Hb_006925_030 Hb_189099_020 Hb_189099_020 Hb_159305_010--Hb_189099_020 Hb_159305_010--Hb_003336_020 Hb_000038_020--Hb_168031_020 Hb_000038_020--Hb_000359_070 Hb_005332_150 Hb_005332_150 Hb_000038_020--Hb_005332_150 Hb_000038_020--Hb_003427_080 Hb_000069_370 Hb_000069_370 Hb_000038_020--Hb_000069_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.5392 23.397 110.148 39.0504 20.5629 32.9373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.988 40.4447 71.2183 6.31588 865.666

CAGE analysis