Hb_000120_920

Information

Type -
Description -
Location Contig120: 707138-713528
Sequence    

Annotation

kegg
ID rcu:RCOM_0873700
description poly(A) polymerase, putative (EC:2.7.7.19)
nr
ID XP_002521705.1
description poly(A) polymerase, putative [Ricinus communis]
swissprot
ID P44439
description Poly(A) polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pcnB PE=3 SV=1
trembl
ID B9S6T6
description Poly(A) polymerase, putative OS=Ricinus communis GN=RCOM_0873700 PE=3 SV=1
Gene Ontology
ID GO:0016779
description polynucleotide adenylyltransferase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06228: 707517-710656 , PASA_asmbl_06229: 710929-712494 , PASA_asmbl_06230: 712507-713666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_920 0.0 - - poly(A) polymerase, putative [Ricinus communis]
2 Hb_165928_020 0.0425312431 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
3 Hb_023386_040 0.0715398609 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
4 Hb_000062_430 0.0733786619 - - PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
5 Hb_004412_010 0.0756865201 - - -
6 Hb_003438_050 0.0795349413 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
7 Hb_003025_110 0.0809002932 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
8 Hb_110291_010 0.0810481206 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003125_160 0.0812855003 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
10 Hb_156973_010 0.081306244 - - conserved hypothetical protein [Ricinus communis]
11 Hb_023480_010 0.0819707872 - - cellular nucleic acid binding protein, putative [Ricinus communis]
12 Hb_023386_020 0.0835754644 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
13 Hb_002737_070 0.0838862395 - - PREDICTED: phagocyte signaling-impaired protein [Jatropha curcas]
14 Hb_004841_010 0.0838869598 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
15 Hb_154745_010 0.0847231917 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_001444_010 0.0849345341 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
17 Hb_000521_120 0.0855663081 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_006252_040 0.085671337 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
19 Hb_003665_060 0.0868577744 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
20 Hb_016172_020 0.0886713509 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000120_920 Hb_000120_920 Hb_165928_020 Hb_165928_020 Hb_000120_920--Hb_165928_020 Hb_023386_040 Hb_023386_040 Hb_000120_920--Hb_023386_040 Hb_000062_430 Hb_000062_430 Hb_000120_920--Hb_000062_430 Hb_004412_010 Hb_004412_010 Hb_000120_920--Hb_004412_010 Hb_003438_050 Hb_003438_050 Hb_000120_920--Hb_003438_050 Hb_003025_110 Hb_003025_110 Hb_000120_920--Hb_003025_110 Hb_004841_010 Hb_004841_010 Hb_165928_020--Hb_004841_010 Hb_023386_020 Hb_023386_020 Hb_165928_020--Hb_023386_020 Hb_016172_020 Hb_016172_020 Hb_165928_020--Hb_016172_020 Hb_165928_020--Hb_004412_010 Hb_165928_020--Hb_000062_430 Hb_154745_010 Hb_154745_010 Hb_023386_040--Hb_154745_010 Hb_000926_190 Hb_000926_190 Hb_023386_040--Hb_000926_190 Hb_006252_040 Hb_006252_040 Hb_023386_040--Hb_006252_040 Hb_005914_060 Hb_005914_060 Hb_023386_040--Hb_005914_060 Hb_000179_030 Hb_000179_030 Hb_023386_040--Hb_000179_030 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070 Hb_002737_070 Hb_002737_070 Hb_000062_430--Hb_002737_070 Hb_000062_430--Hb_004412_010 Hb_000062_430--Hb_004841_010 Hb_000093_160 Hb_000093_160 Hb_000062_430--Hb_000093_160 Hb_007575_050 Hb_007575_050 Hb_004412_010--Hb_007575_050 Hb_004412_010--Hb_023386_020 Hb_003878_070 Hb_003878_070 Hb_004412_010--Hb_003878_070 Hb_016898_010 Hb_016898_010 Hb_004412_010--Hb_016898_010 Hb_004412_010--Hb_023386_040 Hb_003438_050--Hb_003025_110 Hb_000638_120 Hb_000638_120 Hb_003438_050--Hb_000638_120 Hb_007632_240 Hb_007632_240 Hb_003438_050--Hb_007632_240 Hb_001040_100 Hb_001040_100 Hb_003438_050--Hb_001040_100 Hb_023480_010 Hb_023480_010 Hb_003438_050--Hb_023480_010 Hb_003010_020 Hb_003010_020 Hb_003438_050--Hb_003010_020 Hb_004410_030 Hb_004410_030 Hb_003025_110--Hb_004410_030 Hb_000011_200 Hb_000011_200 Hb_003025_110--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_003025_110--Hb_001946_010 Hb_003025_110--Hb_007575_050 Hb_011930_160 Hb_011930_160 Hb_003025_110--Hb_011930_160 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8504 6.00081 8.1756 6.56653 9.98711 18.4787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.29809 10.1018 6.58005 9.22964 9.72966

CAGE analysis