Hb_000120_950

Information

Type -
Description -
Location Contig120: 721755-732267
Sequence    

Annotation

kegg
ID rcu:RCOM_0873670
description GTP binding protein, putative
nr
ID XP_012065370.1
description PREDICTED: protein GRIP [Jatropha curcas]
swissprot
ID Q8S2T0
description Protein GRIP OS=Arabidopsis thaliana GN=GRIP PE=1 SV=2
trembl
ID A0A067LHT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22376 PE=4 SV=1
Gene Ontology
ID GO:0005802
description protein grip

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06234: 721774-733009 , PASA_asmbl_06235: 730247-733009 , PASA_asmbl_06236: 722980-723346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_950 0.0 - - PREDICTED: protein GRIP [Jatropha curcas]
2 Hb_000030_010 0.0469874383 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
3 Hb_000754_060 0.0550834002 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
4 Hb_000190_140 0.0559243863 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
5 Hb_000436_070 0.0592389066 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
6 Hb_001623_420 0.0619082276 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_002477_160 0.0626842948 - - hypothetical protein L484_013453 [Morus notabilis]
8 Hb_001454_210 0.0664892826 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
9 Hb_001584_330 0.0667107179 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
10 Hb_000620_010 0.0670694614 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
11 Hb_002811_360 0.0690757875 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
12 Hb_005306_110 0.0699936215 - - casein kinase, putative [Ricinus communis]
13 Hb_002496_030 0.0705131689 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
14 Hb_168707_030 0.0706005736 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
15 Hb_007951_050 0.0710142239 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_002685_140 0.0724132188 - - PREDICTED: membrin-11 [Jatropha curcas]
17 Hb_175338_030 0.0738640506 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
18 Hb_004724_200 0.0739203109 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
19 Hb_003642_060 0.0739494361 - - hypothetical protein RCOM_1189860 [Ricinus communis]
20 Hb_007908_020 0.0745668935 - - zinc finger family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000120_950 Hb_000120_950 Hb_000030_010 Hb_000030_010 Hb_000120_950--Hb_000030_010 Hb_000754_060 Hb_000754_060 Hb_000120_950--Hb_000754_060 Hb_000190_140 Hb_000190_140 Hb_000120_950--Hb_000190_140 Hb_000436_070 Hb_000436_070 Hb_000120_950--Hb_000436_070 Hb_001623_420 Hb_001623_420 Hb_000120_950--Hb_001623_420 Hb_002477_160 Hb_002477_160 Hb_000120_950--Hb_002477_160 Hb_005062_070 Hb_005062_070 Hb_000030_010--Hb_005062_070 Hb_003609_040 Hb_003609_040 Hb_000030_010--Hb_003609_040 Hb_007547_010 Hb_007547_010 Hb_000030_010--Hb_007547_010 Hb_000030_010--Hb_001623_420 Hb_000392_300 Hb_000392_300 Hb_000030_010--Hb_000392_300 Hb_000754_060--Hb_000190_140 Hb_000754_060--Hb_002477_160 Hb_007951_050 Hb_007951_050 Hb_000754_060--Hb_007951_050 Hb_010381_070 Hb_010381_070 Hb_000754_060--Hb_010381_070 Hb_000554_020 Hb_000554_020 Hb_000754_060--Hb_000554_020 Hb_009111_050 Hb_009111_050 Hb_000190_140--Hb_009111_050 Hb_001454_210 Hb_001454_210 Hb_000190_140--Hb_001454_210 Hb_000190_140--Hb_005062_070 Hb_015306_020 Hb_015306_020 Hb_000190_140--Hb_015306_020 Hb_001051_100 Hb_001051_100 Hb_000436_070--Hb_001051_100 Hb_002027_130 Hb_002027_130 Hb_000436_070--Hb_002027_130 Hb_000620_010 Hb_000620_010 Hb_000436_070--Hb_000620_010 Hb_007908_020 Hb_007908_020 Hb_000436_070--Hb_007908_020 Hb_001248_130 Hb_001248_130 Hb_000436_070--Hb_001248_130 Hb_001584_330 Hb_001584_330 Hb_001623_420--Hb_001584_330 Hb_000224_170 Hb_000224_170 Hb_001623_420--Hb_000224_170 Hb_005306_110 Hb_005306_110 Hb_001623_420--Hb_005306_110 Hb_002685_140 Hb_002685_140 Hb_001623_420--Hb_002685_140 Hb_001623_420--Hb_010381_070 Hb_002307_100 Hb_002307_100 Hb_002477_160--Hb_002307_100 Hb_175338_030 Hb_175338_030 Hb_002477_160--Hb_175338_030 Hb_007558_140 Hb_007558_140 Hb_002477_160--Hb_007558_140 Hb_011918_080 Hb_011918_080 Hb_002477_160--Hb_011918_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.9819 18.6982 15.5303 15.07 42.5978 44.817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.0746 31.4412 49.8354 17.6426 11.9647

CAGE analysis