Hb_000122_040

Information

Type -
Description -
Location Contig122: 18809-20007
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18930g
description POPTRDRAFT_567196; hypothetical protein
nr
ID XP_012091206.1
description PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03366 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_040 0.0 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
2 Hb_007943_140 0.1320400152 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
3 Hb_000438_220 0.1338429785 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
4 Hb_004109_020 0.1360661739 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
5 Hb_001214_140 0.1390874628 - - 60S ribosomal protein L27a, putative [Ricinus communis]
6 Hb_003638_080 0.1423409347 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
7 Hb_000699_040 0.1435911332 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
8 Hb_000134_020 0.1448794078 - - thioredoxin-like family protein [Hevea brasiliensis]
9 Hb_004958_050 0.1502514382 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
10 Hb_004005_010 0.150596882 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
11 Hb_097007_010 0.152656257 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
12 Hb_003988_040 0.1538189291 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
13 Hb_007944_040 0.1546985828 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
14 Hb_007575_070 0.1550060717 - - Histone H3.2 [Glycine soja]
15 Hb_000159_070 0.1588527577 - - JHL03K20.4 [Jatropha curcas]
16 Hb_003579_020 0.1610154629 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
17 Hb_002316_060 0.1624216604 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
18 Hb_011689_050 0.1624640741 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
19 Hb_026398_010 0.1629632757 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
20 Hb_000111_340 0.1662673237 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]

Gene co-expression network

sample Hb_000122_040 Hb_000122_040 Hb_007943_140 Hb_007943_140 Hb_000122_040--Hb_007943_140 Hb_000438_220 Hb_000438_220 Hb_000122_040--Hb_000438_220 Hb_004109_020 Hb_004109_020 Hb_000122_040--Hb_004109_020 Hb_001214_140 Hb_001214_140 Hb_000122_040--Hb_001214_140 Hb_003638_080 Hb_003638_080 Hb_000122_040--Hb_003638_080 Hb_000699_040 Hb_000699_040 Hb_000122_040--Hb_000699_040 Hb_002248_100 Hb_002248_100 Hb_007943_140--Hb_002248_100 Hb_000963_030 Hb_000963_030 Hb_007943_140--Hb_000963_030 Hb_001017_070 Hb_001017_070 Hb_007943_140--Hb_001017_070 Hb_000172_420 Hb_000172_420 Hb_007943_140--Hb_000172_420 Hb_097007_010 Hb_097007_010 Hb_007943_140--Hb_097007_010 Hb_026398_010 Hb_026398_010 Hb_007943_140--Hb_026398_010 Hb_002316_060 Hb_002316_060 Hb_000438_220--Hb_002316_060 Hb_003641_020 Hb_003641_020 Hb_000438_220--Hb_003641_020 Hb_012368_020 Hb_012368_020 Hb_000438_220--Hb_012368_020 Hb_004129_040 Hb_004129_040 Hb_000438_220--Hb_004129_040 Hb_000307_090 Hb_000307_090 Hb_000438_220--Hb_000307_090 Hb_001638_260 Hb_001638_260 Hb_000438_220--Hb_001638_260 Hb_001300_270 Hb_001300_270 Hb_004109_020--Hb_001300_270 Hb_004724_160 Hb_004724_160 Hb_004109_020--Hb_004724_160 Hb_004005_010 Hb_004005_010 Hb_004109_020--Hb_004005_010 Hb_001538_100 Hb_001538_100 Hb_004109_020--Hb_001538_100 Hb_001268_140 Hb_001268_140 Hb_004109_020--Hb_001268_140 Hb_001248_080 Hb_001248_080 Hb_004109_020--Hb_001248_080 Hb_002716_090 Hb_002716_090 Hb_001214_140--Hb_002716_090 Hb_001214_140--Hb_000438_220 Hb_001214_140--Hb_001638_260 Hb_002742_050 Hb_002742_050 Hb_001214_140--Hb_002742_050 Hb_004052_020 Hb_004052_020 Hb_001214_140--Hb_004052_020 Hb_001214_140--Hb_003641_020 Hb_003638_080--Hb_000699_040 Hb_000134_020 Hb_000134_020 Hb_003638_080--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_003638_080--Hb_000236_460 Hb_000617_050 Hb_000617_050 Hb_003638_080--Hb_000617_050 Hb_001053_160 Hb_001053_160 Hb_003638_080--Hb_001053_160 Hb_003638_080--Hb_001214_140 Hb_000699_040--Hb_004052_020 Hb_000699_040--Hb_001214_140 Hb_012753_230 Hb_012753_230 Hb_000699_040--Hb_012753_230 Hb_001504_050 Hb_001504_050 Hb_000699_040--Hb_001504_050 Hb_000699_040--Hb_004724_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02429 2.34371 0.736191 0.741524 1.77039 2.22206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.19235 11.206 1.48933 0.691071 0.677428

CAGE analysis