Hb_000122_060

Information

Type -
Description -
Location Contig122: 59667-60522
Sequence    

Annotation

kegg
ID rcu:RCOM_0688350
description hypothetical protein
nr
ID XP_012091208.1
description PREDICTED: protein LURP-one-related 14 [Jatropha curcas]
swissprot
ID Q9LYM3
description Protein LURP-one-related 14 OS=Arabidopsis thaliana GN=At3g56180 PE=2 SV=2
trembl
ID A0A067JD15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03368 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_060 0.0 - - PREDICTED: protein LURP-one-related 14 [Jatropha curcas]
2 Hb_125948_010 0.1552557324 - - heat-shock protein, putative [Ricinus communis]
3 Hb_002039_050 0.2180771894 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
4 Hb_044653_010 0.2189883521 - - PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
5 Hb_111876_010 0.2272085353 - - Auxin response factor, putative [Ricinus communis]
6 Hb_003438_060 0.2715065499 - - -
7 Hb_001506_030 0.2863285338 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
8 Hb_082945_020 0.2876160891 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
9 Hb_179679_010 0.2974539587 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
10 Hb_011164_010 0.3045969449 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
11 Hb_006745_010 0.3154512293 - - PREDICTED: uncharacterized protein LOC105640095 [Jatropha curcas]
12 Hb_002431_010 0.3236716998 - - PREDICTED: uncharacterized protein LOC104599557 isoform X2 [Nelumbo nucifera]
13 Hb_001504_090 0.3253813317 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
14 Hb_048476_160 0.3265875476 - - hypothetical protein JCGZ_19593 [Jatropha curcas]
15 Hb_005504_020 0.3276075357 - - -
16 Hb_001147_080 0.3280020762 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_129105_010 0.3282775654 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_000571_150 0.3283228856 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
19 Hb_002984_020 0.328803711 - - hypothetical protein EUGRSUZ_J02661 [Eucalyptus grandis]
20 Hb_000836_100 0.3328838158 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000122_060 Hb_000122_060 Hb_125948_010 Hb_125948_010 Hb_000122_060--Hb_125948_010 Hb_002039_050 Hb_002039_050 Hb_000122_060--Hb_002039_050 Hb_044653_010 Hb_044653_010 Hb_000122_060--Hb_044653_010 Hb_111876_010 Hb_111876_010 Hb_000122_060--Hb_111876_010 Hb_003438_060 Hb_003438_060 Hb_000122_060--Hb_003438_060 Hb_001506_030 Hb_001506_030 Hb_000122_060--Hb_001506_030 Hb_125948_010--Hb_044653_010 Hb_002984_020 Hb_002984_020 Hb_125948_010--Hb_002984_020 Hb_125948_010--Hb_002039_050 Hb_002431_010 Hb_002431_010 Hb_125948_010--Hb_002431_010 Hb_001103_070 Hb_001103_070 Hb_125948_010--Hb_001103_070 Hb_011164_010 Hb_011164_010 Hb_002039_050--Hb_011164_010 Hb_002999_060 Hb_002999_060 Hb_002039_050--Hb_002999_060 Hb_006745_010 Hb_006745_010 Hb_002039_050--Hb_006745_010 Hb_000062_030 Hb_000062_030 Hb_002039_050--Hb_000062_030 Hb_001504_090 Hb_001504_090 Hb_002039_050--Hb_001504_090 Hb_013394_060 Hb_013394_060 Hb_002039_050--Hb_013394_060 Hb_044653_010--Hb_001506_030 Hb_163400_010 Hb_163400_010 Hb_044653_010--Hb_163400_010 Hb_070541_030 Hb_070541_030 Hb_044653_010--Hb_070541_030 Hb_014361_050 Hb_014361_050 Hb_044653_010--Hb_014361_050 Hb_111876_010--Hb_002039_050 Hb_000035_310 Hb_000035_310 Hb_111876_010--Hb_000035_310 Hb_111876_010--Hb_125948_010 Hb_004374_130 Hb_004374_130 Hb_111876_010--Hb_004374_130 Hb_000979_010 Hb_000979_010 Hb_111876_010--Hb_000979_010 Hb_048476_160 Hb_048476_160 Hb_003438_060--Hb_048476_160 Hb_001147_080 Hb_001147_080 Hb_003438_060--Hb_001147_080 Hb_102129_010 Hb_102129_010 Hb_003438_060--Hb_102129_010 Hb_005654_020 Hb_005654_020 Hb_003438_060--Hb_005654_020 Hb_145708_010 Hb_145708_010 Hb_003438_060--Hb_145708_010 Hb_001506_030--Hb_163400_010 Hb_186304_010 Hb_186304_010 Hb_001506_030--Hb_186304_010 Hb_076233_020 Hb_076233_020 Hb_001506_030--Hb_076233_020 Hb_001506_030--Hb_014361_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0434906 0.584947 0.136657 0.701484 0.796607 0.245602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.079358 0 0 0

CAGE analysis