Hb_000122_120

Information

Type -
Description -
Location Contig122: 102986-105179
Sequence    

Annotation

kegg
ID rcu:RCOM_0687850
description prephenate dehydrogenase, putative
nr
ID XP_012086542.1
description PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q944B6
description Arogenate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT1 PE=1 SV=1
trembl
ID A0A067LJ71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01185 PE=4 SV=1
Gene Ontology
ID GO:0004665
description arogenate dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06661: 103009-103400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_120 0.0 - - PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
2 Hb_010175_010 0.2619388559 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006154_020 0.2620736294 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
4 Hb_113084_010 0.2636455331 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
5 Hb_000668_090 0.2703650644 - - senescence-associated family protein [Populus trichocarpa]
6 Hb_058620_060 0.2739801446 - - uncharacterized protein LOC105646159 precursor [Jatropha curcas]
7 Hb_019516_090 0.2742186941 - - hypothetical protein POPTR_0004s06350g [Populus trichocarpa]
8 Hb_010098_060 0.2746125493 - - PREDICTED: BTB/POZ domain-containing protein At5g17580 [Jatropha curcas]
9 Hb_000069_670 0.2795612317 - - PREDICTED: uncharacterized protein LOC105642887 [Jatropha curcas]
10 Hb_001124_100 0.2804059069 - - PREDICTED: vesicle-associated protein 2-2-like isoform X1 [Jatropha curcas]
11 Hb_000496_110 0.2845900832 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
12 Hb_001289_020 0.2865651172 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
13 Hb_007416_100 0.2913776729 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
14 Hb_003641_030 0.2918457506 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
15 Hb_001489_130 0.2923614989 - - Pectate lyase precursor, putative [Ricinus communis]
16 Hb_079483_020 0.2936010647 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X2 [Jatropha curcas]
17 Hb_004116_020 0.2948276438 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
18 Hb_001405_140 0.2964765551 - - hypothetical protein POPTR_0004s08350g, partial [Populus trichocarpa]
19 Hb_007925_010 0.2989411482 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
20 Hb_003687_250 0.3003780979 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000122_120 Hb_000122_120 Hb_010175_010 Hb_010175_010 Hb_000122_120--Hb_010175_010 Hb_006154_020 Hb_006154_020 Hb_000122_120--Hb_006154_020 Hb_113084_010 Hb_113084_010 Hb_000122_120--Hb_113084_010 Hb_000668_090 Hb_000668_090 Hb_000122_120--Hb_000668_090 Hb_058620_060 Hb_058620_060 Hb_000122_120--Hb_058620_060 Hb_019516_090 Hb_019516_090 Hb_000122_120--Hb_019516_090 Hb_000331_540 Hb_000331_540 Hb_010175_010--Hb_000331_540 Hb_000496_110 Hb_000496_110 Hb_010175_010--Hb_000496_110 Hb_010098_060 Hb_010098_060 Hb_010175_010--Hb_010098_060 Hb_000300_410 Hb_000300_410 Hb_010175_010--Hb_000300_410 Hb_001541_060 Hb_001541_060 Hb_010175_010--Hb_001541_060 Hb_001124_100 Hb_001124_100 Hb_006154_020--Hb_001124_100 Hb_008699_030 Hb_008699_030 Hb_006154_020--Hb_008699_030 Hb_183086_050 Hb_183086_050 Hb_006154_020--Hb_183086_050 Hb_113818_010 Hb_113818_010 Hb_006154_020--Hb_113818_010 Hb_003687_250 Hb_003687_250 Hb_006154_020--Hb_003687_250 Hb_008053_050 Hb_008053_050 Hb_006154_020--Hb_008053_050 Hb_113084_010--Hb_000668_090 Hb_033546_020 Hb_033546_020 Hb_113084_010--Hb_033546_020 Hb_000035_280 Hb_000035_280 Hb_113084_010--Hb_000035_280 Hb_001001_050 Hb_001001_050 Hb_113084_010--Hb_001001_050 Hb_003098_010 Hb_003098_010 Hb_113084_010--Hb_003098_010 Hb_001776_030 Hb_001776_030 Hb_000668_090--Hb_001776_030 Hb_003964_020 Hb_003964_020 Hb_000668_090--Hb_003964_020 Hb_000074_100 Hb_000074_100 Hb_000668_090--Hb_000074_100 Hb_000668_090--Hb_001001_050 Hb_004619_070 Hb_004619_070 Hb_000668_090--Hb_004619_070 Hb_004064_030 Hb_004064_030 Hb_000668_090--Hb_004064_030 Hb_000252_220 Hb_000252_220 Hb_058620_060--Hb_000252_220 Hb_002539_100 Hb_002539_100 Hb_058620_060--Hb_002539_100 Hb_058620_060--Hb_001124_100 Hb_001606_060 Hb_001606_060 Hb_058620_060--Hb_001606_060 Hb_027073_010 Hb_027073_010 Hb_058620_060--Hb_027073_010 Hb_011671_080 Hb_011671_080 Hb_058620_060--Hb_011671_080 Hb_011380_020 Hb_011380_020 Hb_019516_090--Hb_011380_020 Hb_000258_150 Hb_000258_150 Hb_019516_090--Hb_000258_150 Hb_022174_010 Hb_022174_010 Hb_019516_090--Hb_022174_010 Hb_004680_080 Hb_004680_080 Hb_019516_090--Hb_004680_080 Hb_000138_050 Hb_000138_050 Hb_019516_090--Hb_000138_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0347 0 0.293082 1.70366 0.0754397 0.0666399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.260311 0.341038 0.241979 0 0.938256

CAGE analysis