Hb_000122_130

Information

Type -
Description -
Location Contig122: 106575-110605
Sequence    

Annotation

kegg
ID rcu:RCOM_0687840
description hypothetical protein
nr
ID XP_002520805.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S486
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0687840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06662: 110048-110581 , PASA_asmbl_06663: 110582-110811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_049675_010 0.0693144942 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
3 Hb_010436_020 0.0882017151 - - Dicer-like protein 4 [Morus notabilis]
4 Hb_012490_040 0.0962207746 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
5 Hb_002890_340 0.0981351086 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
6 Hb_012395_190 0.1124440469 - - hypothetical protein B456_005G053800 [Gossypium raimondii]
7 Hb_005280_010 0.1163038079 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
8 Hb_011310_070 0.1187702575 - - ADP,ATP carrier protein, putative [Ricinus communis]
9 Hb_000088_010 0.1190008945 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_034271_030 0.1190910242 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
11 Hb_003581_140 0.1215992033 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
12 Hb_000069_460 0.1222591066 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
13 Hb_001902_050 0.1226494352 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
14 Hb_000139_380 0.1243004935 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005754_060 0.1248599599 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009111_050 0.1256456168 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
17 Hb_000236_250 0.1256904622 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000696_110 0.1262417455 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
19 Hb_098993_010 0.1270278936 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
20 Hb_000421_260 0.127462847 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000122_130 Hb_000122_130 Hb_049675_010 Hb_049675_010 Hb_000122_130--Hb_049675_010 Hb_010436_020 Hb_010436_020 Hb_000122_130--Hb_010436_020 Hb_012490_040 Hb_012490_040 Hb_000122_130--Hb_012490_040 Hb_002890_340 Hb_002890_340 Hb_000122_130--Hb_002890_340 Hb_012395_190 Hb_012395_190 Hb_000122_130--Hb_012395_190 Hb_005280_010 Hb_005280_010 Hb_000122_130--Hb_005280_010 Hb_049675_010--Hb_010436_020 Hb_049675_010--Hb_012490_040 Hb_034271_030 Hb_034271_030 Hb_049675_010--Hb_034271_030 Hb_049675_010--Hb_002890_340 Hb_049675_010--Hb_005280_010 Hb_010436_020--Hb_034271_030 Hb_010436_030 Hb_010436_030 Hb_010436_020--Hb_010436_030 Hb_001019_060 Hb_001019_060 Hb_010436_020--Hb_001019_060 Hb_010436_020--Hb_012490_040 Hb_012490_040--Hb_034271_030 Hb_000914_070 Hb_000914_070 Hb_012490_040--Hb_000914_070 Hb_003195_060 Hb_003195_060 Hb_012490_040--Hb_003195_060 Hb_012490_040--Hb_002890_340 Hb_000421_260 Hb_000421_260 Hb_002890_340--Hb_000421_260 Hb_015306_020 Hb_015306_020 Hb_002890_340--Hb_015306_020 Hb_002039_010 Hb_002039_010 Hb_002890_340--Hb_002039_010 Hb_004046_010 Hb_004046_010 Hb_002890_340--Hb_004046_010 Hb_001720_050 Hb_001720_050 Hb_002890_340--Hb_001720_050 Hb_009111_050 Hb_009111_050 Hb_002890_340--Hb_009111_050 Hb_000088_010 Hb_000088_010 Hb_012395_190--Hb_000088_010 Hb_012395_190--Hb_049675_010 Hb_007943_080 Hb_007943_080 Hb_012395_190--Hb_007943_080 Hb_010710_010 Hb_010710_010 Hb_012395_190--Hb_010710_010 Hb_000497_140 Hb_000497_140 Hb_012395_190--Hb_000497_140 Hb_000236_250 Hb_000236_250 Hb_005280_010--Hb_000236_250 Hb_071736_010 Hb_071736_010 Hb_005280_010--Hb_071736_010 Hb_011310_070 Hb_011310_070 Hb_005280_010--Hb_011310_070 Hb_000139_380 Hb_000139_380 Hb_005280_010--Hb_000139_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.36164 0.510385 0.349001 0.375267 2.70415 5.00817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.98761 1.81945 4.03819 1.71672 0.827917

CAGE analysis