Hb_000122_140

Information

Type -
Description -
Location Contig122: 110740-111111
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06663: 110582-110811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_140 0.0 - - -
2 Hb_007380_110 0.1748330106 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
3 Hb_000953_060 0.1798007341 - - PREDICTED: putative phytosulfokines 6 [Vitis vinifera]
4 Hb_012305_040 0.2006923467 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
5 Hb_144898_010 0.2098532168 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
6 Hb_004243_010 0.2178727983 - - hypothetical protein JCGZ_01580 [Jatropha curcas]
7 Hb_065525_030 0.2205941326 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
8 Hb_002235_140 0.2218968588 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001722_020 0.2221928895 - - -
10 Hb_181320_010 0.2229627261 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
11 Hb_005000_100 0.2231940907 - - PCI domain-containing protein 2 [Morus notabilis]
12 Hb_000861_030 0.2268170711 - - -
13 Hb_003061_010 0.2299604605 - - hypothetical protein SORBIDRAFT_01g039870 [Sorghum bicolor]
14 Hb_012807_080 0.2326531134 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
15 Hb_002918_090 0.2334853366 - - PREDICTED: auxin-repressed 12.5 kDa protein-like [Nelumbo nucifera]
16 Hb_001252_170 0.2338508286 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
17 Hb_071923_010 0.2355837084 - - -
18 Hb_000152_740 0.2357705235 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
19 Hb_004662_010 0.2367930331 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
20 Hb_057490_010 0.238237037 - - PREDICTED: mannose-1-phosphate guanyltransferase alpha [Jatropha curcas]

Gene co-expression network

sample Hb_000122_140 Hb_000122_140 Hb_007380_110 Hb_007380_110 Hb_000122_140--Hb_007380_110 Hb_000953_060 Hb_000953_060 Hb_000122_140--Hb_000953_060 Hb_012305_040 Hb_012305_040 Hb_000122_140--Hb_012305_040 Hb_144898_010 Hb_144898_010 Hb_000122_140--Hb_144898_010 Hb_004243_010 Hb_004243_010 Hb_000122_140--Hb_004243_010 Hb_065525_030 Hb_065525_030 Hb_000122_140--Hb_065525_030 Hb_003995_010 Hb_003995_010 Hb_007380_110--Hb_003995_010 Hb_007380_110--Hb_065525_030 Hb_057490_010 Hb_057490_010 Hb_007380_110--Hb_057490_010 Hb_005000_100 Hb_005000_100 Hb_007380_110--Hb_005000_100 Hb_000814_090 Hb_000814_090 Hb_007380_110--Hb_000814_090 Hb_023327_030 Hb_023327_030 Hb_007380_110--Hb_023327_030 Hb_080530_020 Hb_080530_020 Hb_000953_060--Hb_080530_020 Hb_181320_010 Hb_181320_010 Hb_000953_060--Hb_181320_010 Hb_000861_030 Hb_000861_030 Hb_000953_060--Hb_000861_030 Hb_176117_010 Hb_176117_010 Hb_000953_060--Hb_176117_010 Hb_005016_150 Hb_005016_150 Hb_000953_060--Hb_005016_150 Hb_004662_010 Hb_004662_010 Hb_012305_040--Hb_004662_010 Hb_000176_120 Hb_000176_120 Hb_012305_040--Hb_000176_120 Hb_000107_140 Hb_000107_140 Hb_012305_040--Hb_000107_140 Hb_073339_010 Hb_073339_010 Hb_012305_040--Hb_073339_010 Hb_012305_040--Hb_144898_010 Hb_004241_040 Hb_004241_040 Hb_012305_040--Hb_004241_040 Hb_144898_010--Hb_000107_140 Hb_144898_010--Hb_181320_010 Hb_005305_060 Hb_005305_060 Hb_144898_010--Hb_005305_060 Hb_001722_020 Hb_001722_020 Hb_144898_010--Hb_001722_020 Hb_005054_070 Hb_005054_070 Hb_144898_010--Hb_005054_070 Hb_012807_080 Hb_012807_080 Hb_144898_010--Hb_012807_080 Hb_004243_010--Hb_005054_070 Hb_004243_010--Hb_004241_040 Hb_000529_100 Hb_000529_100 Hb_004243_010--Hb_000529_100 Hb_004243_010--Hb_012305_040 Hb_004243_010--Hb_144898_010 Hb_004243_010--Hb_000176_120 Hb_065525_030--Hb_005000_100 Hb_004361_050 Hb_004361_050 Hb_065525_030--Hb_004361_050 Hb_004608_020 Hb_004608_020 Hb_065525_030--Hb_004608_020 Hb_004881_050 Hb_004881_050 Hb_065525_030--Hb_004881_050 Hb_000457_060 Hb_000457_060 Hb_065525_030--Hb_000457_060 Hb_000248_050 Hb_000248_050 Hb_065525_030--Hb_000248_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46625 0.343026 0.165978 0.626244 1.03843 4.17752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.15025 0.542199 0 1.18072 0

CAGE analysis