Hb_000122_260

Information

Type transcription factor
Description TF Family: SNF2
Location Contig122: 207471-212903
Sequence    

Annotation

kegg
ID rcu:RCOM_0687520
description ATP-dependent helicase, putative
nr
ID XP_012086690.1
description PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
swissprot
ID F4K493
description SNF2 domain-containing protein CLASSY 2 OS=Arabidopsis thaliana GN=CLSY2 PE=1 SV=1
trembl
ID A0A067LBY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01198 PE=4 SV=1
Gene Ontology
ID GO:0005524
description snf2 domain-containing protein classy 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06676: 211859-211977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_260 0.0 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
2 Hb_000108_250 0.1141549216 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Jatropha curcas]
3 Hb_002894_090 0.1308901012 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
4 Hb_002010_110 0.1737823196 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
5 Hb_010098_040 0.1741610478 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
6 Hb_000975_050 0.1769797575 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
7 Hb_000966_040 0.1806133725 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
8 Hb_005181_120 0.1833012593 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_007982_040 0.1843420028 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
10 Hb_003494_130 0.1847469097 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
11 Hb_000069_370 0.185397392 - - -
12 Hb_000359_160 0.1903034088 - - PREDICTED: protein CAJ1 [Jatropha curcas]
13 Hb_005332_150 0.1931068447 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
14 Hb_011053_030 0.1943394562 - - -
15 Hb_017895_060 0.1946663955 - - PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic [Jatropha curcas]
16 Hb_001266_160 0.1969578514 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
17 Hb_004109_130 0.1978129553 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
18 Hb_000834_060 0.1979598645 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_020400_020 0.1983980582 - - starch synthase isoform II [Manihot esculenta]
20 Hb_004979_050 0.2007897072 - - hypothetical protein JCGZ_23771 [Jatropha curcas]

Gene co-expression network

sample Hb_000122_260 Hb_000122_260 Hb_000108_250 Hb_000108_250 Hb_000122_260--Hb_000108_250 Hb_002894_090 Hb_002894_090 Hb_000122_260--Hb_002894_090 Hb_002010_110 Hb_002010_110 Hb_000122_260--Hb_002010_110 Hb_010098_040 Hb_010098_040 Hb_000122_260--Hb_010098_040 Hb_000975_050 Hb_000975_050 Hb_000122_260--Hb_000975_050 Hb_000966_040 Hb_000966_040 Hb_000122_260--Hb_000966_040 Hb_000108_250--Hb_010098_040 Hb_004837_100 Hb_004837_100 Hb_000108_250--Hb_004837_100 Hb_000684_200 Hb_000684_200 Hb_000108_250--Hb_000684_200 Hb_002636_030 Hb_002636_030 Hb_000108_250--Hb_002636_030 Hb_000803_170 Hb_000803_170 Hb_000108_250--Hb_000803_170 Hb_000069_370 Hb_000069_370 Hb_002894_090--Hb_000069_370 Hb_001266_160 Hb_001266_160 Hb_002894_090--Hb_001266_160 Hb_011053_030 Hb_011053_030 Hb_002894_090--Hb_011053_030 Hb_000359_160 Hb_000359_160 Hb_002894_090--Hb_000359_160 Hb_002894_090--Hb_000975_050 Hb_001221_400 Hb_001221_400 Hb_002010_110--Hb_001221_400 Hb_003494_130 Hb_003494_130 Hb_002010_110--Hb_003494_130 Hb_020400_020 Hb_020400_020 Hb_002010_110--Hb_020400_020 Hb_012799_190 Hb_012799_190 Hb_002010_110--Hb_012799_190 Hb_001579_150 Hb_001579_150 Hb_002010_110--Hb_001579_150 Hb_000762_110 Hb_000762_110 Hb_002010_110--Hb_000762_110 Hb_005181_120 Hb_005181_120 Hb_010098_040--Hb_005181_120 Hb_002811_250 Hb_002811_250 Hb_010098_040--Hb_002811_250 Hb_000516_080 Hb_000516_080 Hb_010098_040--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_010098_040--Hb_007982_040 Hb_000679_080 Hb_000679_080 Hb_010098_040--Hb_000679_080 Hb_010098_040--Hb_000684_200 Hb_000975_050--Hb_000966_040 Hb_000975_050--Hb_010098_040 Hb_000834_080 Hb_000834_080 Hb_000975_050--Hb_000834_080 Hb_000441_050 Hb_000441_050 Hb_000975_050--Hb_000441_050 Hb_000975_050--Hb_005181_120 Hb_005977_060 Hb_005977_060 Hb_000975_050--Hb_005977_060 Hb_004712_200 Hb_004712_200 Hb_000966_040--Hb_004712_200 Hb_000193_220 Hb_000193_220 Hb_000966_040--Hb_000193_220 Hb_000966_040--Hb_010098_040 Hb_004109_130 Hb_004109_130 Hb_000966_040--Hb_004109_130 Hb_000208_270 Hb_000208_270 Hb_000966_040--Hb_000208_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134755 0.205481 0.386401 0.315983 0 0.0134501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114555 0.027045 0.121117 0.0678577 1.15826

CAGE analysis