Hb_000123_070

Information

Type -
Description -
Location Contig123: 45459-48355
Sequence    

Annotation

kegg
ID rcu:RCOM_0766900
description (R)-limonene synthase, putative (EC:4.2.3.20)
nr
ID XP_012075360.1
description PREDICTED: terpene synthase 10-like [Jatropha curcas]
swissprot
ID B9T536
description Terpene synthase 10 OS=Ricinus communis GN=TPS10 PE=2 SV=1
trembl
ID A0A067KK14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09482 PE=4 SV=1
Gene Ontology
ID GO:0009507
description terpene synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_070 0.0 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
2 Hb_101462_010 0.0770424368 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
3 Hb_161881_010 0.0815874756 - - laccase, putative [Ricinus communis]
4 Hb_012528_040 0.083926425 - - -
5 Hb_007595_030 0.096978412 - - psbA gene product (chloroplast) [Silene noctiflora]
6 Hb_000373_140 0.0978983733 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
7 Hb_000938_050 0.0994494113 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
8 Hb_004208_040 0.1012487923 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
9 Hb_002010_010 0.1022330449 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
10 Hb_088080_010 0.1062089792 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
11 Hb_004375_020 0.1062481518 - - hypothetical protein VITISV_034560 [Vitis vinifera]
12 Hb_031194_030 0.1066445189 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
13 Hb_009193_050 0.1066510901 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
14 Hb_003053_100 0.1068545794 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
15 Hb_000922_110 0.1104328395 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
16 Hb_149598_010 0.1119575341 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
17 Hb_007645_050 0.112852676 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
18 Hb_010053_060 0.1128567721 - - ATP-binding cassette transporter, putative [Ricinus communis]
19 Hb_159308_010 0.1149443714 - - ribosomal protein S4 [Cercidiphyllum japonicum]
20 Hb_002835_420 0.1182533784 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]

Gene co-expression network

sample Hb_000123_070 Hb_000123_070 Hb_101462_010 Hb_101462_010 Hb_000123_070--Hb_101462_010 Hb_161881_010 Hb_161881_010 Hb_000123_070--Hb_161881_010 Hb_012528_040 Hb_012528_040 Hb_000123_070--Hb_012528_040 Hb_007595_030 Hb_007595_030 Hb_000123_070--Hb_007595_030 Hb_000373_140 Hb_000373_140 Hb_000123_070--Hb_000373_140 Hb_000938_050 Hb_000938_050 Hb_000123_070--Hb_000938_050 Hb_101462_010--Hb_000373_140 Hb_004208_040 Hb_004208_040 Hb_101462_010--Hb_004208_040 Hb_079902_010 Hb_079902_010 Hb_101462_010--Hb_079902_010 Hb_004987_040 Hb_004987_040 Hb_101462_010--Hb_004987_040 Hb_004375_020 Hb_004375_020 Hb_101462_010--Hb_004375_020 Hb_002010_010 Hb_002010_010 Hb_161881_010--Hb_002010_010 Hb_161881_010--Hb_012528_040 Hb_000922_110 Hb_000922_110 Hb_161881_010--Hb_000922_110 Hb_003732_030 Hb_003732_030 Hb_161881_010--Hb_003732_030 Hb_004030_010 Hb_004030_010 Hb_161881_010--Hb_004030_010 Hb_001001_130 Hb_001001_130 Hb_012528_040--Hb_001001_130 Hb_012528_040--Hb_002010_010 Hb_000135_080 Hb_000135_080 Hb_012528_040--Hb_000135_080 Hb_014109_020 Hb_014109_020 Hb_012528_040--Hb_014109_020 Hb_088080_010 Hb_088080_010 Hb_007595_030--Hb_088080_010 Hb_007645_050 Hb_007645_050 Hb_007595_030--Hb_007645_050 Hb_031194_030 Hb_031194_030 Hb_007595_030--Hb_031194_030 Hb_003963_030 Hb_003963_030 Hb_007595_030--Hb_003963_030 Hb_005018_050 Hb_005018_050 Hb_007595_030--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_007595_030--Hb_003407_050 Hb_000373_140--Hb_004208_040 Hb_000373_140--Hb_079902_010 Hb_000373_140--Hb_004987_040 Hb_000373_140--Hb_004375_020 Hb_000938_050--Hb_005018_050 Hb_000938_050--Hb_003407_050 Hb_000938_050--Hb_031194_030 Hb_003120_090 Hb_003120_090 Hb_000938_050--Hb_003120_090 Hb_002704_090 Hb_002704_090 Hb_000938_050--Hb_002704_090 Hb_002835_420 Hb_002835_420 Hb_000938_050--Hb_002835_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0949731 0.246966 0.0671539 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.054014 4.90295

CAGE analysis