Hb_000123_080

Information

Type transcription factor
Description TF Family: B3
Location Contig123: 50838-55617
Sequence    

Annotation

kegg
ID rcu:RCOM_0465210
description hypothetical protein
nr
ID CAN71750.1
description hypothetical protein VITISV_040593 [Vitis vinifera]
swissprot
ID Q9ZSH7
description B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2 SV=1
trembl
ID A5AWG7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040593 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_080 0.0 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
2 Hb_013405_170 0.0006495565 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
3 Hb_000378_020 0.0010702399 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
4 Hb_004117_220 0.0013127992 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
5 Hb_005743_040 0.0015117575 - - JHL22C18.10 [Jatropha curcas]
6 Hb_021281_010 0.0061472267 - - Major latex protein, putative [Ricinus communis]
7 Hb_001882_120 0.00718809 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
8 Hb_008887_060 0.0072582767 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
9 Hb_000101_110 0.0132553251 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
10 Hb_043777_010 0.015753597 - - conserved hypothetical protein [Ricinus communis]
11 Hb_138485_010 0.0166969077 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
12 Hb_003891_020 0.0209247575 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
13 Hb_001279_060 0.0214442417 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
14 Hb_007407_020 0.0245037079 - - ATP binding protein, putative [Ricinus communis]
15 Hb_086720_010 0.0255625146 - - CTV.19 [Citrus trifoliata]
16 Hb_002759_210 0.0279184515 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
17 Hb_000295_140 0.0281023666 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
18 Hb_032907_020 0.0289312742 - - calmodulin binding protein, putative [Ricinus communis]
19 Hb_000012_360 0.0297497139 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
20 Hb_000272_060 0.0306717007 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000123_080 Hb_000123_080 Hb_013405_170 Hb_013405_170 Hb_000123_080--Hb_013405_170 Hb_000378_020 Hb_000378_020 Hb_000123_080--Hb_000378_020 Hb_004117_220 Hb_004117_220 Hb_000123_080--Hb_004117_220 Hb_005743_040 Hb_005743_040 Hb_000123_080--Hb_005743_040 Hb_021281_010 Hb_021281_010 Hb_000123_080--Hb_021281_010 Hb_001882_120 Hb_001882_120 Hb_000123_080--Hb_001882_120 Hb_013405_170--Hb_005743_040 Hb_013405_170--Hb_000378_020 Hb_013405_170--Hb_004117_220 Hb_013405_170--Hb_021281_010 Hb_013405_170--Hb_001882_120 Hb_000378_020--Hb_004117_220 Hb_000378_020--Hb_005743_040 Hb_008887_060 Hb_008887_060 Hb_000378_020--Hb_008887_060 Hb_000378_020--Hb_021281_010 Hb_004117_220--Hb_005743_040 Hb_004117_220--Hb_008887_060 Hb_004117_220--Hb_021281_010 Hb_005743_040--Hb_021281_010 Hb_005743_040--Hb_001882_120 Hb_021281_010--Hb_001882_120 Hb_000101_110 Hb_000101_110 Hb_021281_010--Hb_000101_110 Hb_001882_120--Hb_000101_110 Hb_001882_120--Hb_000378_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0555343 0.0717855 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis