Hb_000123_090

Information

Type transcription factor
Description TF Family: B3
Location Contig123: 58727-75561
Sequence    

Annotation

kegg
ID vvi:100267202
description putative B3 domain-containing protein Os03g0621600
nr
ID XP_012091546.1
description PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
swissprot
ID Q8L3W1
description B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1
trembl
ID A0A059BBI7
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06955: 73935-75343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_090 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
2 Hb_008864_110 0.0630475851 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
3 Hb_000933_020 0.0718144893 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003605_130 0.0735493087 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
5 Hb_002400_470 0.0752789366 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_001195_560 0.0757942711 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
7 Hb_001047_030 0.0769150873 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
8 Hb_000214_040 0.080620263 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000538_100 0.0824806583 - - conserved hypothetical protein [Ricinus communis]
10 Hb_030131_040 0.0834112301 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
11 Hb_002671_100 0.0839354967 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
12 Hb_001369_180 0.0839855309 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
13 Hb_001051_080 0.0850603158 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
14 Hb_007059_010 0.0858829643 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
15 Hb_003030_070 0.0877623515 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
16 Hb_000322_100 0.0878653367 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
17 Hb_003018_130 0.0893514749 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
18 Hb_003018_060 0.0894676279 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
19 Hb_001341_120 0.0905709233 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
20 Hb_006620_020 0.0905789559 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]

Gene co-expression network

sample Hb_000123_090 Hb_000123_090 Hb_008864_110 Hb_008864_110 Hb_000123_090--Hb_008864_110 Hb_000933_020 Hb_000933_020 Hb_000123_090--Hb_000933_020 Hb_003605_130 Hb_003605_130 Hb_000123_090--Hb_003605_130 Hb_002400_470 Hb_002400_470 Hb_000123_090--Hb_002400_470 Hb_001195_560 Hb_001195_560 Hb_000123_090--Hb_001195_560 Hb_001047_030 Hb_001047_030 Hb_000123_090--Hb_001047_030 Hb_008864_110--Hb_003605_130 Hb_008864_110--Hb_002400_470 Hb_000645_120 Hb_000645_120 Hb_008864_110--Hb_000645_120 Hb_008864_110--Hb_001047_030 Hb_000538_100 Hb_000538_100 Hb_008864_110--Hb_000538_100 Hb_000933_020--Hb_003605_130 Hb_000933_020--Hb_008864_110 Hb_007426_150 Hb_007426_150 Hb_000933_020--Hb_007426_150 Hb_000002_490 Hb_000002_490 Hb_000933_020--Hb_000002_490 Hb_000933_020--Hb_001195_560 Hb_000214_040 Hb_000214_040 Hb_003605_130--Hb_000214_040 Hb_010193_050 Hb_010193_050 Hb_003605_130--Hb_010193_050 Hb_002823_030 Hb_002823_030 Hb_003605_130--Hb_002823_030 Hb_001140_350 Hb_001140_350 Hb_003605_130--Hb_001140_350 Hb_002400_470--Hb_001047_030 Hb_057878_010 Hb_057878_010 Hb_002400_470--Hb_057878_010 Hb_000236_380 Hb_000236_380 Hb_002400_470--Hb_000236_380 Hb_005532_050 Hb_005532_050 Hb_002400_470--Hb_005532_050 Hb_001195_560--Hb_007426_150 Hb_003018_130 Hb_003018_130 Hb_001195_560--Hb_003018_130 Hb_028308_010 Hb_028308_010 Hb_001195_560--Hb_028308_010 Hb_000617_100 Hb_000617_100 Hb_001195_560--Hb_000617_100 Hb_014361_070 Hb_014361_070 Hb_001195_560--Hb_014361_070 Hb_001195_560--Hb_002823_030 Hb_001301_200 Hb_001301_200 Hb_001047_030--Hb_001301_200 Hb_007904_200 Hb_007904_200 Hb_001047_030--Hb_007904_200 Hb_048937_040 Hb_048937_040 Hb_001047_030--Hb_048937_040 Hb_010457_030 Hb_010457_030 Hb_001047_030--Hb_010457_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9022 6.54511 6.08264 10.7895 14.8094 13.8082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.43145 7.39592 6.32266 4.95916 5.07881

CAGE analysis