Hb_000123_110

Information

Type -
Description -
Location Contig123: 78305-82085
Sequence    

Annotation

kegg
ID pxb:103948390
description pentatricopeptide repeat-containing protein At2g39620-like
nr
ID XP_009357692.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Pyrus x bretschneideri]
swissprot
ID P93011
description Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
trembl
ID A0A0B2Q1K7
description Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_016168 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Pyrus x bretschneideri]
2 Hb_001514_190 0.1008835853 - - -
3 Hb_006499_010 0.1458493221 - - -
4 Hb_005867_040 0.1479970458 transcription factor TF Family: RWP-RK PREDICTED: protein RKD4 [Jatropha curcas]
5 Hb_004522_040 0.1505184933 - - PREDICTED: probable galacturonosyltransferase 9 [Populus euphratica]
6 Hb_002849_210 0.1539391381 - - protein binding protein, putative [Ricinus communis]
7 Hb_031403_010 0.1548635952 - - hypothetical protein POPTR_0001s40140g [Populus trichocarpa]
8 Hb_001930_070 0.1575585317 - - -
9 Hb_000163_290 0.1608201127 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
10 Hb_001518_020 0.1683011311 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
11 Hb_000951_060 0.1687774006 - - mads box protein, putative [Ricinus communis]
12 Hb_000127_020 0.1688197581 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
13 Hb_001186_060 0.1707742889 - - -
14 Hb_001478_050 0.1743008764 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
15 Hb_000029_270 0.1745511853 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
16 Hb_007245_090 0.1756604601 - - -
17 Hb_004882_020 0.177461538 - - -
18 Hb_000339_070 0.1779643036 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Populus euphratica]
19 Hb_000300_620 0.180361439 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
20 Hb_005298_010 0.1824759126 - - -

Gene co-expression network

sample Hb_000123_110 Hb_000123_110 Hb_001514_190 Hb_001514_190 Hb_000123_110--Hb_001514_190 Hb_006499_010 Hb_006499_010 Hb_000123_110--Hb_006499_010 Hb_005867_040 Hb_005867_040 Hb_000123_110--Hb_005867_040 Hb_004522_040 Hb_004522_040 Hb_000123_110--Hb_004522_040 Hb_002849_210 Hb_002849_210 Hb_000123_110--Hb_002849_210 Hb_031403_010 Hb_031403_010 Hb_000123_110--Hb_031403_010 Hb_001930_070 Hb_001930_070 Hb_001514_190--Hb_001930_070 Hb_001514_190--Hb_006499_010 Hb_001514_190--Hb_031403_010 Hb_007245_090 Hb_007245_090 Hb_001514_190--Hb_007245_090 Hb_000014_100 Hb_000014_100 Hb_001514_190--Hb_000014_100 Hb_006499_010--Hb_001930_070 Hb_000163_290 Hb_000163_290 Hb_006499_010--Hb_000163_290 Hb_006499_010--Hb_007245_090 Hb_000033_050 Hb_000033_050 Hb_006499_010--Hb_000033_050 Hb_001186_060 Hb_001186_060 Hb_006499_010--Hb_001186_060 Hb_003747_240 Hb_003747_240 Hb_006499_010--Hb_003747_240 Hb_000032_260 Hb_000032_260 Hb_005867_040--Hb_000032_260 Hb_005867_040--Hb_031403_010 Hb_000085_300 Hb_000085_300 Hb_005867_040--Hb_000085_300 Hb_005276_100 Hb_005276_100 Hb_005867_040--Hb_005276_100 Hb_000340_430 Hb_000340_430 Hb_005867_040--Hb_000340_430 Hb_003751_120 Hb_003751_120 Hb_005867_040--Hb_003751_120 Hb_000127_020 Hb_000127_020 Hb_004522_040--Hb_000127_020 Hb_085659_010 Hb_085659_010 Hb_004522_040--Hb_085659_010 Hb_004522_040--Hb_001186_060 Hb_000107_650 Hb_000107_650 Hb_004522_040--Hb_000107_650 Hb_004522_040--Hb_000163_290 Hb_001518_020 Hb_001518_020 Hb_002849_210--Hb_001518_020 Hb_000809_040 Hb_000809_040 Hb_002849_210--Hb_000809_040 Hb_009026_050 Hb_009026_050 Hb_002849_210--Hb_009026_050 Hb_000179_050 Hb_000179_050 Hb_002849_210--Hb_000179_050 Hb_000339_070 Hb_000339_070 Hb_002849_210--Hb_000339_070 Hb_000124_020 Hb_000124_020 Hb_002849_210--Hb_000124_020 Hb_031403_010--Hb_003751_120 Hb_000304_020 Hb_000304_020 Hb_031403_010--Hb_000304_020 Hb_031403_010--Hb_009026_050 Hb_031403_010--Hb_000809_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.051403 0.0108058 0 0 0.0218019 0.01906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0247512 0.0389486 0.0368428 0.0155084 0

CAGE analysis