Hb_000123_120

Information

Type -
Description -
Location Contig123: 91183-92815
Sequence    

Annotation

kegg
ID egr:104420924
description actin-depolymerizing factor 2-like
nr
ID ADV04049.1
description actin depolymerizing factor 4 [Hevea brasiliensis]
swissprot
ID Q9FVI1
description Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1
trembl
ID F8RW91
description Actin depolymerizing factor 4 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0015629
description actin-depolymerizing factor 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06956: 91312-93895 , PASA_asmbl_06957: 91543-92511
cDNA
(Sanger)
(ID:Location)		 006_H04.ab1: 91556-93818 , 007_F17.ab1: 91413-93778 , 018_H12.ab1: 91521-93778 , 023_M06.ab1: 91413-93778 , 028_E18.ab1: 91554-93829 , 033_A17.ab1: 91380-93778 , 033_C02.ab1: 91448-93778 , 033_P03.ab1: 91689-93798 , 034_I18.ab1: 91555-93818 , 036_I09.ab1: 91613-93830 , 037_F04.ab1: 91515-93895 , 042_N23.ab1: 91553-93830 , 046_H05.ab1: 91556-93818 , 050_J15.ab1: 91440-93778

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_120 0.0 - - actin depolymerizing factor 4 [Hevea brasiliensis]
2 Hb_000008_470 0.0803825496 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
3 Hb_000754_060 0.0817876226 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
4 Hb_003862_050 0.0829136035 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
5 Hb_010795_010 0.0833893961 - - protein with unknown function [Ricinus communis]
6 Hb_010381_070 0.0862438666 - - PREDICTED: protein STU1-like [Jatropha curcas]
7 Hb_011224_110 0.08778296 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
8 Hb_171900_080 0.0881016439 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
9 Hb_019654_100 0.0882817659 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
10 Hb_005539_350 0.088803245 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002518_140 0.092321522 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
12 Hb_000175_460 0.0924233389 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_126643_020 0.093562182 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
14 Hb_003055_120 0.0937205918 - - Protein C20orf11, putative [Ricinus communis]
15 Hb_112798_030 0.0949707252 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001913_010 0.0957342257 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
17 Hb_178968_110 0.096371475 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
18 Hb_001439_150 0.0977254712 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
19 Hb_001511_020 0.0981746315 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
20 Hb_002188_130 0.098744925 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000123_120 Hb_000123_120 Hb_000008_470 Hb_000008_470 Hb_000123_120--Hb_000008_470 Hb_000754_060 Hb_000754_060 Hb_000123_120--Hb_000754_060 Hb_003862_050 Hb_003862_050 Hb_000123_120--Hb_003862_050 Hb_010795_010 Hb_010795_010 Hb_000123_120--Hb_010795_010 Hb_010381_070 Hb_010381_070 Hb_000123_120--Hb_010381_070 Hb_011224_110 Hb_011224_110 Hb_000123_120--Hb_011224_110 Hb_004678_040 Hb_004678_040 Hb_000008_470--Hb_004678_040 Hb_001305_010 Hb_001305_010 Hb_000008_470--Hb_001305_010 Hb_004324_070 Hb_004324_070 Hb_000008_470--Hb_004324_070 Hb_000175_460 Hb_000175_460 Hb_000008_470--Hb_000175_460 Hb_000230_200 Hb_000230_200 Hb_000008_470--Hb_000230_200 Hb_000853_430 Hb_000853_430 Hb_000008_470--Hb_000853_430 Hb_000190_140 Hb_000190_140 Hb_000754_060--Hb_000190_140 Hb_000120_950 Hb_000120_950 Hb_000754_060--Hb_000120_950 Hb_002477_160 Hb_002477_160 Hb_000754_060--Hb_002477_160 Hb_007951_050 Hb_007951_050 Hb_000754_060--Hb_007951_050 Hb_000754_060--Hb_010381_070 Hb_000554_020 Hb_000554_020 Hb_000754_060--Hb_000554_020 Hb_003862_050--Hb_000175_460 Hb_019654_100 Hb_019654_100 Hb_003862_050--Hb_019654_100 Hb_007813_040 Hb_007813_040 Hb_003862_050--Hb_007813_040 Hb_005348_140 Hb_005348_140 Hb_003862_050--Hb_005348_140 Hb_002496_030 Hb_002496_030 Hb_003862_050--Hb_002496_030 Hb_000010_400 Hb_000010_400 Hb_003862_050--Hb_000010_400 Hb_002518_140 Hb_002518_140 Hb_010795_010--Hb_002518_140 Hb_000030_010 Hb_000030_010 Hb_010795_010--Hb_000030_010 Hb_171900_080 Hb_171900_080 Hb_010795_010--Hb_171900_080 Hb_000392_300 Hb_000392_300 Hb_010795_010--Hb_000392_300 Hb_010795_010--Hb_019654_100 Hb_000139_410 Hb_000139_410 Hb_010381_070--Hb_000139_410 Hb_002375_020 Hb_002375_020 Hb_010381_070--Hb_002375_020 Hb_004109_200 Hb_004109_200 Hb_010381_070--Hb_004109_200 Hb_001623_420 Hb_001623_420 Hb_010381_070--Hb_001623_420 Hb_001584_330 Hb_001584_330 Hb_010381_070--Hb_001584_330 Hb_153112_020 Hb_153112_020 Hb_011224_110--Hb_153112_020 Hb_004657_050 Hb_004657_050 Hb_011224_110--Hb_004657_050 Hb_002163_020 Hb_002163_020 Hb_011224_110--Hb_002163_020 Hb_001277_070 Hb_001277_070 Hb_011224_110--Hb_001277_070 Hb_000331_080 Hb_000331_080 Hb_011224_110--Hb_000331_080 Hb_005539_350 Hb_005539_350 Hb_011224_110--Hb_005539_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
641.158 259.346 259.251 194.71 380.073 433.177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
454.615 561.712 744.286 143.906 126.663

CAGE analysis