Hb_000123_140

Information

Type -
Description -
Location Contig123: 95188-95796
Sequence    

Annotation

kegg
ID pop:POPTR_0002s14680g
description POPTRDRAFT_755153; hypothetical protein
nr
ID XP_011017475.1
description PREDICTED: 21 kDa protein-like [Populus euphratica]
swissprot
ID P17407
description 21 kDa protein OS=Daucus carota PE=2 SV=1
trembl
ID B9GPE2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s14680g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06959: 94278-95862 , PASA_asmbl_06960: 94463-95339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_140 0.0 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
2 Hb_000211_040 0.1047438721 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
3 Hb_000959_190 0.1234706845 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
4 Hb_001322_020 0.1237157473 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
5 Hb_155025_010 0.1293621879 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
6 Hb_000120_350 0.1318865372 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
7 Hb_006935_040 0.1357288502 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
8 Hb_000300_710 0.1358338013 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
9 Hb_000062_360 0.1387599993 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
10 Hb_000363_350 0.1454426675 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
11 Hb_000424_070 0.1462942332 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
12 Hb_006555_040 0.147450822 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
13 Hb_000345_290 0.1477135722 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000212_300 0.1479517186 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
15 Hb_011609_010 0.1482157372 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
16 Hb_007263_010 0.1505571196 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
17 Hb_000836_350 0.151983969 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]
18 Hb_001839_020 0.1528969366 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
19 Hb_030545_010 0.153831535 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
20 Hb_014231_020 0.153947865 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]

Gene co-expression network

sample Hb_000123_140 Hb_000123_140 Hb_000211_040 Hb_000211_040 Hb_000123_140--Hb_000211_040 Hb_000959_190 Hb_000959_190 Hb_000123_140--Hb_000959_190 Hb_001322_020 Hb_001322_020 Hb_000123_140--Hb_001322_020 Hb_155025_010 Hb_155025_010 Hb_000123_140--Hb_155025_010 Hb_000120_350 Hb_000120_350 Hb_000123_140--Hb_000120_350 Hb_006935_040 Hb_006935_040 Hb_000123_140--Hb_006935_040 Hb_015292_040 Hb_015292_040 Hb_000211_040--Hb_015292_040 Hb_006555_040 Hb_006555_040 Hb_000211_040--Hb_006555_040 Hb_000140_440 Hb_000140_440 Hb_000211_040--Hb_000140_440 Hb_004994_080 Hb_004994_080 Hb_000211_040--Hb_004994_080 Hb_007263_010 Hb_007263_010 Hb_000211_040--Hb_007263_010 Hb_000732_030 Hb_000732_030 Hb_000959_190--Hb_000732_030 Hb_001123_110 Hb_001123_110 Hb_000959_190--Hb_001123_110 Hb_000959_190--Hb_000120_350 Hb_000008_390 Hb_000008_390 Hb_000959_190--Hb_000008_390 Hb_000640_050 Hb_000640_050 Hb_000959_190--Hb_000640_050 Hb_004957_020 Hb_004957_020 Hb_000959_190--Hb_004957_020 Hb_000959_220 Hb_000959_220 Hb_001322_020--Hb_000959_220 Hb_003470_040 Hb_003470_040 Hb_001322_020--Hb_003470_040 Hb_029695_080 Hb_029695_080 Hb_001322_020--Hb_029695_080 Hb_000062_360 Hb_000062_360 Hb_001322_020--Hb_000062_360 Hb_003506_030 Hb_003506_030 Hb_001322_020--Hb_003506_030 Hb_014231_020 Hb_014231_020 Hb_001322_020--Hb_014231_020 Hb_155025_010--Hb_000140_440 Hb_002265_010 Hb_002265_010 Hb_155025_010--Hb_002265_010 Hb_006120_040 Hb_006120_040 Hb_155025_010--Hb_006120_040 Hb_155025_010--Hb_006555_040 Hb_000836_350 Hb_000836_350 Hb_155025_010--Hb_000836_350 Hb_155025_010--Hb_001322_020 Hb_000120_350--Hb_001123_110 Hb_002151_010 Hb_002151_010 Hb_000120_350--Hb_002151_010 Hb_000120_350--Hb_006935_040 Hb_000300_710 Hb_000300_710 Hb_000120_350--Hb_000300_710 Hb_000928_250 Hb_000928_250 Hb_006935_040--Hb_000928_250 Hb_001894_160 Hb_001894_160 Hb_006935_040--Hb_001894_160 Hb_006935_040--Hb_000008_390 Hb_015026_020 Hb_015026_020 Hb_006935_040--Hb_015026_020 Hb_003106_200 Hb_003106_200 Hb_006935_040--Hb_003106_200 Hb_001414_050 Hb_001414_050 Hb_006935_040--Hb_001414_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.42173 5.04801 14.9232 4.63374 3.54379 2.06386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.56805 2.40647 0.408194 1.08144 3.46341

CAGE analysis