Hb_000123_180

Information

Type -
Description -
Location Contig123: 137319-153371
Sequence    

Annotation

kegg
ID rcu:RCOM_0465620
description 2-oxoglutarate dehydrogenase, putative (EC:1.2.4.2)
nr
ID XP_002528465.1
description 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q54JE4
description 2-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=ogdh PE=3 SV=1
trembl
ID B9SR46
description 2-oxoglutarate dehydrogenase, putative OS=Ricinus communis GN=RCOM_0465620 PE=4 SV=1
Gene Ontology
ID GO:0004591
description 2-oxoglutarate mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06971: 136650-142539 , PASA_asmbl_06972: 140554-140791 , PASA_asmbl_06973: 136817-137144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_180 0.0 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
2 Hb_000494_050 0.0560680675 - - cationic amino acid transporter, putative [Ricinus communis]
3 Hb_011819_020 0.0700396305 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
4 Hb_012632_010 0.0742561847 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
5 Hb_002890_130 0.0753195997 - - tip120, putative [Ricinus communis]
6 Hb_004019_120 0.0770124779 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
7 Hb_012518_070 0.0789437519 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
8 Hb_004044_050 0.0796646097 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
9 Hb_001377_350 0.081152043 - - PREDICTED: exportin-2 [Jatropha curcas]
10 Hb_012055_040 0.0817417199 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
11 Hb_000003_100 0.0828420181 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
12 Hb_000667_030 0.0829627437 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
13 Hb_000317_100 0.0831229142 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
14 Hb_002817_060 0.0832212567 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
15 Hb_005215_010 0.0834698674 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
16 Hb_002235_200 0.0838327911 - - pattern formation protein, putative [Ricinus communis]
17 Hb_001828_170 0.084188886 - - PREDICTED: protein TPLATE [Jatropha curcas]
18 Hb_001329_250 0.0846721391 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
19 Hb_065500_020 0.0848124373 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
20 Hb_000313_120 0.0852008079 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]

Gene co-expression network

sample Hb_000123_180 Hb_000123_180 Hb_000494_050 Hb_000494_050 Hb_000123_180--Hb_000494_050 Hb_011819_020 Hb_011819_020 Hb_000123_180--Hb_011819_020 Hb_012632_010 Hb_012632_010 Hb_000123_180--Hb_012632_010 Hb_002890_130 Hb_002890_130 Hb_000123_180--Hb_002890_130 Hb_004019_120 Hb_004019_120 Hb_000123_180--Hb_004019_120 Hb_012518_070 Hb_012518_070 Hb_000123_180--Hb_012518_070 Hb_012055_040 Hb_012055_040 Hb_000494_050--Hb_012055_040 Hb_005215_010 Hb_005215_010 Hb_000494_050--Hb_005215_010 Hb_000494_050--Hb_011819_020 Hb_000317_100 Hb_000317_100 Hb_000494_050--Hb_000317_100 Hb_000494_050--Hb_012518_070 Hb_011819_020--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_011819_020--Hb_000261_480 Hb_011819_020--Hb_000317_100 Hb_002749_060 Hb_002749_060 Hb_011819_020--Hb_002749_060 Hb_003280_020 Hb_003280_020 Hb_011819_020--Hb_003280_020 Hb_011819_020--Hb_005215_010 Hb_003058_260 Hb_003058_260 Hb_012632_010--Hb_003058_260 Hb_002071_070 Hb_002071_070 Hb_012632_010--Hb_002071_070 Hb_012632_010--Hb_002890_130 Hb_000856_040 Hb_000856_040 Hb_012632_010--Hb_000856_040 Hb_002830_010 Hb_002830_010 Hb_012632_010--Hb_002830_010 Hb_004374_110 Hb_004374_110 Hb_012632_010--Hb_004374_110 Hb_002411_110 Hb_002411_110 Hb_002890_130--Hb_002411_110 Hb_002890_130--Hb_000317_100 Hb_002890_130--Hb_005215_010 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_002890_130--Hb_000261_480 Hb_009296_040 Hb_009296_040 Hb_004019_120--Hb_009296_040 Hb_000230_260 Hb_000230_260 Hb_004019_120--Hb_000230_260 Hb_000556_220 Hb_000556_220 Hb_004019_120--Hb_000556_220 Hb_001377_350 Hb_001377_350 Hb_004019_120--Hb_001377_350 Hb_001195_470 Hb_001195_470 Hb_004019_120--Hb_001195_470 Hb_000140_210 Hb_000140_210 Hb_004019_120--Hb_000140_210 Hb_001440_020 Hb_001440_020 Hb_012518_070--Hb_001440_020 Hb_012518_070--Hb_012055_040 Hb_012518_070--Hb_000317_100 Hb_012114_100 Hb_012114_100 Hb_012518_070--Hb_012114_100 Hb_012518_070--Hb_005215_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7327 42.3919 32.1886 50.8474 34.5442 26.5556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1129 12.9627 39.5588 42.7163 47.89

CAGE analysis